Job Description P63389 Confidence 98.50% Date Thu Jan 5 12:08:08 GMT 2012 Rank 87 Aligned Residues 208 % Identity 19% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Q	R	A	T	R	L	A	Q	Q	Q	A	M	Y	E	S	Q	Q	E	R	V	A	H	L	Q	S	Y	I	D	R	F	R	A	K	A	T	K	A	K	Q	A	Q	S	R	I	K	M	L	E	R	M	E	L	I	A	P	A	H	V	D	N	P	F	R	F	S	F	R	A	P	E	S	L	P	N	P	L	L	K
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		E	K	K	L	A	N	L	I	N	A	E	E	R	R	D	V	S	L	K	D	C	M	R	R	L	F	Y	N	F	D	K	N	Y	K	D	W	Q	S	A	V	E	C	I	A	V	L	D	V	L	L	C	L	A	N	Y	S	R	G	G	D	G	P	M	C	R	P	V	I	L	L	P	E	D	.	T	P	P	F	L	E
Template Known Secondary structure																																T	T																								T	T		S	S	S			B							T	T	T	.	S		S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		1012	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.		.	.	.	.	.	1090
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.							.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.										.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.
Predicted Secondary structure																						.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																						.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.															.	.
Query Sequence		M	E	K	V	S	A	G	Y	G	D	R	I	I	L	D	S	I	K	L	N	.	.	.	.	.	.	L	V	P	G	S	R	I	G	L	L	G	R	N	G	A	G	K	S	T	L	I	K	L	L	A	G	E	.	.	.	.	.	.	.	.	.	L	A	P	V	S	G	E	I	G	L	A	K	G	I	.	.	K	L
Query Conservation																						.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.															.	.
Alig confidence																						.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		L	K	G	S	R	H	P	C	G	D	D	F	I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F	T	R	L
Template Known Secondary structure																									S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		1091	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.			.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		G	Y	F	A	Q	H	Q	L	E	Y	L	R	A	D	E	S	P	I	Q	H	L	A	R	L	A	P	Q	E	L	E	Q	K	L	R	D	Y	L	G	G	F	G	F	Q	G	D	K	V	T	E	E	T	R	R	F	S	.	.	G	G	E	K	A	R	L	V	L	A	L	I	V	W	Q	R	P	N	L	L	L	L	D
Query Conservation																																																									.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1178																																																						.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.						.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		E	P	T	N	H	L	D	L	D	M	R	Q	A	L	T	E	A	L	I	E	F	.	.	.	.	.	E	G	A	L	V	V	V	S	H	D	R	H	L	L	R	S	T	T	D	D
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.
Template Conservation
Template Sequence		E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure			S		T	T	S																			T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1214	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions