Job Description P63389 Confidence 96.75% Date Thu Jan 5 12:08:08 GMT 2012 Rank 184 Aligned Residues 129 % Identity 20% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	I	K	L	N	L	V	P	G	S	R	I	G	L	L	G	R	N	G	A	G	K	S	T	L	I	K	L	L	A	G	E	L	A	P	V	S	G	E	I	G	L	A	K	G	I	K	L	G	Y	F	A	Q	H	Q	L	E	Y	L	R	A	D	E	S	P	I	Q	H	L	A	R	L	A	P	Q	E	L	E	Q
Query Conservation
Alig confidence																																									.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	.	.	.	.	.	K	K	V	L	V	V	S	A	D	V	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	I	K
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S	.	.	.	.	.					B						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure																																									.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.																				.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.	.	.	.
Predicted Secondary structure																																																				.																					.	.
Query SS confidence																																																				.																					.	.
Query Sequence		K	L	R	D	Y	L	G	G	F	G	F	Q	G	D	K	V	T	E	E	T	R	R	F	S	G	G	E	K	A	R	L	V	L	A	L	I	V	W	Q	R	P	N	L	L	L	L	D	E	P	T	.	N	H	L	D	L	D	M	R	Q	A	L	T	E	A	L	I	E	F	E	G	.	.	A	L	V	V	V	S
Query Conservation																																																				.																					.	.
Alig confidence														.	.	.																																				.																					.	.
Template Conservation														.	.	.
Template Sequence		Q	L	E	T	L	A	E	Q	V	G	V	D	.	.	.	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D
Template Known Secondary structure										T	T			.	.	.					S	S				T	T													T	T		S											S	S																		S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions