Phyre 2 alignment of P63389 with c1wxqA

Job Description P63389
Confidence 99.74% Date Thu Jan 5 12:08:08 GMT 2012

Rank 64 Aligned Residues 309

% Identity 11% Template c1wxqA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	V	G	L	V	G	K	N	G	C	G	K	S	T	L	L	A	L	L	K	N	E	I	S	A	D	G	G	S	Y	T	F	P	G	S	W	Q	L	A	W	V	N	Q	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	P	Q	A	A	L	E	Y	V	I	D	G	D	R
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	I	G	V	V	G	K	P	N	V	G	K	S	T	F	F	S	A	A	T	L	A	N	V	G	V	T	Y	A	I	T	D	H	P	C	K	E	L	G	C	S	P	N	P	Q	N	Y	E	Y	R	N	G	L	A	L	I	P	V	K	X	V	D	V	A	F	L	D	D	L	R	X	A	S	A	L	I	H	V	V	D
Template Known Secondary structure								T	T	S	S																							S		S	S	S			S				S	S	S				T	T																S	S	T	T		S
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	Y	R	Q	L	E	A	Q	L	H	D	A	N	E	R	N	D	G	H	A	I	A	T	I	H	G	K	L	D	A	I	D	A	W	S	I	R	S	R	A	A	S	L	L	H	G	L	G	F	S	N	E	Q	L	E	R	P	V	S	D	F	S	G	G	W	R	M	R	L	N	L	A	Q	A	L	I	C	R	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	T	G	K	T	D	P	E	G	Q	P	T	D	Y	H	D	P	V	E	D	I	E	F	L	E	R	E	I	D	Y	W	I	Y	G	I	L	S	K	G	W	D	K	F	A	K	R	I	K	L	Q	K	I	K	L	E	S	A	I	A	E	H	L	S	G	I	G	V	N	E	N	D	V	W	E	A	X	H	K	L	N
Template Known Secondary structure	T	T			B		T	T	S		B		S																									T	T	T					S	T	T	T	S	S												T	G	G	G	T													T	T
Template Predicted Secondary structure
Template SS confidence
	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence	L	L	L	L	D	E	P	T	N	H	L	D	L	D	A	V	I	W	L	E	K	W	L	K	S	Y	Q	G	T	L	I	L	I	S	H	D	R	D	F	L	D	P	I	V	D	K	I	I	H	I	.	.	.	E	Q	Q	S	M	F	E	Y	T	G	N	Y	S	S	F	E	V	Q	R	A	T	R	L	A	Q	Q	Q
Query Conservation																																																			.	.	.
Alig confidence																				.	.																														.	.	.																				.	.	.	.	.
Template Conservation																				.	.																																																				.	.	.	.	.
Template Sequence	L	P	E	D	P	T	K	W	S	Q	D	D	L	L	A	F	A	S	E	.	.	I	R	R	V	N	K	P	X	V	I	A	A	N	K	A	D	A	A	S	D	E	Q	I	K	R	L	V	R	E	E	E	K	R	G	Y	I	V	I	P	T	S	A	A	A	E	L	T	L	R	K	A	.	.	.	.	.	A	K	A
Template Known Secondary structure			S		G	G	G													.	.						S									G	G	G	S															T	T																S		.	.	.	.	.	S	S	S
Template Predicted Secondary structure																				.	.																																																				.	.	.	.	.
Template SS confidence
	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	M	Y	E	S	Q	Q	E	R	V	A	H	L	Q	S	Y	I	D	R	F	R	A	K	A	T	K	A	K	Q	A	Q	S	R	I	K	M	L	E	R	M	E	L	I	A	P	A	H	V	D	N	P	F	R	F	S	F	R	A	P	E	S	L	P	N	P	L	L	K	M	E	K	V	S	A	G	Y	G	D	R	I
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.
Template Sequence	G	F	I	E	Y	I	P	A	L	X	V	I	K	E	K	V	L	D	R	F	G	S	T	G	V	Q	E	V	I	N	R	V	V	F	D	L	L	K	L	I	P	V	Y	P	V	H	D	E	Q	F	G	N	V	L	P	H	V	F	L	X	K	K	G	S	T	P	R	D	L	A	F	K	.	.	.	.	.	.	.	.
Template Known Secondary structure					S				T	T							T	S	S	S	S	S		S											T	T	S									S					S		S	S								T	T										.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence	I	L	D	S	I	K	L	N	L	V	P	G	S	R	I	G	L	L	G	R	N	G	.	.	A	G	K	S	T	L	I	K
Query Conservation																							.	.
Alig confidence	.	.	.	.																			.	.
Template Conservation	.	.	.	.
Template Sequence	.	.	.	.	V	H	T	D	L	G	K	G	F	L	Y	A	I	N	A	R	T	K	R	R	V	G	E	D	Y	E	L	Q
Template Known Secondary structure	.	.	.	.								T							T	T	T		S	B			T	T
Template Predicted Secondary structure	.	.	.	.
Template SS confidence
					358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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