Job Description P63389 Confidence 100.00% Date Thu Jan 5 12:08:08 GMT 2012 Rank 12 Aligned Residues 327 % Identity 21% Template c1oxtB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.															.
Predicted Secondary structure												.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	F	S	S	L	Q	I	R	R	.	.	G	V	R	V	L	L	D	N	A	T	A	T	I	N	P	G	Q	K	V	G	L	V	G	K	N	G	C	G	K	S	T	L	L	A	L	L	K	N	E	I	S	A	D	G	G	S	Y	T	F	P	G	S	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q
Query Conservation												.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	V	K	N	V	S	K	V	F	K	K	G	K	V	V	A	L	D	N	V	N	I	N	I	E	N	G	E	R	F	G	I	L	G	P	S	G	A	G	K	T	T	F	M	R	I	I	A	G	L	D	V	P	S	T	G	E	L	Y	F	D	D	R	L	V	A	S	N	G	K	L	I	V	P	P	E	D	R	K
Template Known Secondary structure												G	G	G	T													T	T									T	T	S	S										T	S	S			S							T	T						T	T			S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	W	V	N	Q	E	T	P	A	L	P	Q	A	A	L	E	Y	V	I	D	G	D	R	E	Y	R	Q	L	E	A	Q	L	H	D	A	N	E	R	N	D	G	H	A	I	A	T	I	H	G	K	L	D	A	I	D	A	W	S	I	R	S	R	A	A	S	L	L	H	G	L	G	F	S	N	E	Q	L	E	R
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		I	G	M	V	F	Q	T	W	A	L	Y	P	N	L	T	A	F	E	N	I	A	F	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	M	K	M	S	K	E	E	I	R	K	R	V	E	E	V	A	K	I	L	D	I	.	H	H	V	L	N	H
Template Known Secondary structure							T	T					T	T	S								G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S																	T	T		.	G	G	G	T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		P	V	S	D	F	S	G	G	W	R	M	R	L	N	L	A	Q	A	L	I	C	R	S	D	L	L	L	L	D	E	P	T	N	H	L	D	L	D	A	V	I	W	L	E	K	W	L	K	S	Y	.	.	.	.	Q	G	T	L	I	L	I	S	H	D	R	D	F	L	D	P	I	V	D	K	I	I	H	I	E	Q
Query Conservation																																																				.	.	.	.
Alig confidence																																																				.	.	.	.
Template Conservation
Template Sequence		F	P	R	E	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	D	P	S	L	L	L	L	D	E	P	F	S	N	L	D	A	R	M	R	D	S	A	R	A	L	V	K	E	V	Q	S	R	L	G	V	T	L	L	V	V	S	H	D	P	A	D	I	F	A	I	A	D	R	V	G	V	L	V	K
Template Known Secondary structure			G	G	G	S															T	T			S						S	S	S	S	S	S																												S										S							T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	M	F	E	Y	T	G	N	Y	S	S	F	E	V	Q	R	A	T	R	L	A	Q	Q	Q	A	M	Y	E	S	Q	Q	E	R	V	A	H	L	Q	S	Y	I	D	R	F	R	A	K	A	T	K	A	K	Q	A	Q	S	R	I	K	M	L	E	R	M	E	L	I	A	P	A	H	V	D	N	P	F	R	F	S
Query Conservation
Alig confidence							.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	L	V	Q	.	V	G	K	P	E	D	L	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	V	S	I	Q	V	A	S	L	I	G	E	I	N	E	L	E	G	K	V	T	N	E	G	V	V	I	G	S	L	R
Template Known Secondary structure		T					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S								S											S	S	S				T	T
Template Predicted Secondary structure							.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.		.	.	.	.	.	.	.	.	230																																		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		F	R	A	P	E	S	L	P	N	P	L	L	K	M	E	K	V	S	A	G	Y	G	D	R	I	I	L	D	S	I	K	L	N	L	V	P	G	S	R	I	G	L	L	G	R	N	G	A	G	K	S	T	L	I	K	L	L	A	G	E	L	A	P	V	S	G	E	I	G	L	A	K	G	I	K	L	G	.	Y	F
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		F	P	V	S	V	S	S	D	R	A	I	I	G	I	R	P	E	D	V	K	L	S	K	D	V	I	K	D	D	S	W	I	L	V	G	K	G	K	V	K	V	I	G	Y	Q	G	G	L	F	R	I	T	I	T	P	L	D	S	E	E	E	I	F	T	Y	S	D	H	P	I	H	S	G	E	E	V	L	V	Y	V
Template Known Secondary structure			S				S	S	S								G	G	G					S	S					T	T																T	T									T	T										S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		381	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	H	Q	L	E	Y	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	D	K	I	K	V	F	E
Template Known Secondary structure			G	G	G
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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