Return to main results Retrieve Phyre Job Id

Job DescriptionP75796
Confidence100.00%DateThu Jan 5 12:14:14 GMT 2012
Rank9Aligned Residues499
% Identity22%Templatec2r6fA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60...... ..
Predicted Secondary structure 






















.....................

Query SS confidence 
























































. . . . . . . . . . . . . . . . . . . . .

Query Sequence  GNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL. . . . . . . . . . . . . . . . . . . . . EQ
Query Conservation   


 
 

   
         
  


 
  

   


 









 
 
  .....................  
Alig confidence 








.........






































.....................

Template Conservation     
   
 .........
   
  


 
  


  


 








  


                         
Template Sequence  XDKIIVKGA. . . . . . . . . RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQXEKP
Template Known Secondary structure 

.........
SSS

STTSSTTSSTTTTTS
TS


Template Predicted Secondary structure 



.........






































Template SS confidence 















































































   1........ 10.........20.........30.........40.........50.........60.........70.
 
   6970.........80.........90.........100.........110.........120.........130. ........
Predicted Secondary structure 






























.........



Query SS confidence 






























































. . . . . . . . .







Query Sequence  AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI. . . . . . . . . RLHQNASR
Query Conservation    
 
                                
  
 
 
   
    

   
 
 
.........        
Alig confidence 












......................



























.........







Template Conservation      
      
 ......................       
 
     

 
       
                  
Template Sequence  DVDAIEGLSPAIS. . . . . . . . . . . . . . . . . . . . . . IDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQS
Template Known Secondary structure  SS


......................SSTTS


TT
BTST
B
TTT

B


Template Predicted Secondary structure 









......................














Template SS confidence 















































































   72.......80.... .....90.........100.........110.........120.........
 
   140.........150....... ..160.........170.........180.........190.........200.........210.
Predicted Secondary structure 




......













..
Query SS confidence 

















. . . . . .





















































. .
Query Sequence  EEAMVEAKRMLDQVRIPE. . . . . . AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI. .
Query Conservation           

   

  ......           








 

 

   
 







  

      
   
..
Alig confidence 

















......





















































..
Template Conservation                                     





 







     





  
 

      
   
  
Template Sequence  QTIEQXVDRLLSYPERTKXQILAPIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGF
Template Known Secondary structure 

TS
TT





STTTTSTTT

SS
TTT

Template Predicted Secondary structure 
































Template SS confidence 















































































   130.........140.........150.........160.........170.........180.........190.........200.........
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation        
 
                  
   
              
                                 
Template Sequence  SIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPYYPQLLEAVCRHYGIPXDVPVKDLPK
Template Known Secondary structure 


GGGG
SSSTTTB
TTTTS



SSS

BGGG
SSSSS





SS
BGGGS
Template Predicted Secondary structure 
































Template SS confidence 















































































   256...260.........270.........280.........290.........300.........310.........320.........330.....
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                          
       
Template Sequence  EQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQXEKYXAEQPCPTCQGYRLKKESLAV
Template Known Secondary structure 

TT



B

B
SSS
B

B








TTGGG
TTTTTS
B
TTTTT
Template Predicted Secondary structure 


























Template SS confidence 















































































   340.........350.........360.........370.........380.........390.........400.........410.........
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                   
                              
    
           

         
   
Template Sequence  LVGGKHIGEVTAXSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQI
Template Known Secondary structure  SSS
BTSB



ST
TTSBSSSBGGG

Template Predicted Secondary structure 




Template SS confidence 















































































   420.........430.........440.........450.........460.........470.........480.........490.........
 
   212.......220.........230.........240.. .......250......
Predicted Secondary structure  .............................







......



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . .






























. . . . . .













Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KVLQKEMSMGVIFITHDMGVVAEIADRVLVM. . . . . . YQGEAVETGTVEQI
Query Conservation  .............................  
      


 



   
   

 
  
......  
 

  
     
Alig confidence  .............................




















.








......













Template Conservation           

      
       
   
                  
 .        
                    
Template Sequence  GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDEDTX. LAADYLIDIGPGAGIHGGEVVAAGTPEEV
Template Known Secondary structure  TT


S

TTTT

GGGTTT



.S
S
SSSGGG

S
TTTT
Template Predicted Secondary structure 






.








Template SS confidence 















































































   500.........510.........520.........530.........540......... 550.........560.........570........
 
   257..260.........270. .....
Predicted Secondary structure  ............................................................
Query SS confidence 














. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .




Query Sequence  FHAPQHPYTRALLAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VPQLG
Query Conservation             
   ............................................................     
Alig confidence 














............................................................




Template Conservation                                           
  
                                   
Template Sequence  XNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQK
Template Known Secondary structure  TT
TT
TTTSS




SS




S

SSS

SSSS

B
TTSSTTT
Template Predicted Secondary structure 












Template SS confidence 















































































   579580.........590.........600.........610.........620.........630.........640.........650........
 
   277..280.........290.........300.........310.........320.........330.........340.........350......
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  AMKGLDYPRRFPLISLEHPAKQAPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLV
Query Conservation                                       
    
   
                
  

  
  

   
 
Alig confidence 

















































...........


















Template Conservation                                                    ...........  
  

  
  
  



Template Sequence  LHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIR. . . . . . . . . . . DVFASTNEAKVRGYKKGRF
Template Known Secondary structure 






S
S
GGG
S
SS
S
SSTT

T...........TSTT

TTTT
Template Predicted Secondary structure 






































...........










Template SS confidence 















































































   659660.........670.........680.........690.........700........ .710.........720.......
 
   357..360.........370.........380.........390.........400.........410.........420..... ....430.....
Predicted Secondary structure 































.




Query SS confidence 




































































.









Query Sequence  GESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSII. EPLRVHGLLP
Query Conservation 
 









 
 
   
  
 
   
              
  
  
 
 
   
    

   
 .  
       
Alig confidence 






































..........



















.









Template Conservation 
 







   
 
      
 
              ..........      
      



 
            
Template Sequence  SFNVKGGRCEACHGDGIIKIEXHFLPDVYVPCEVCHGKR. . . . . . . . . . YNRETLEVTYKGKNIAEVLDXTVEDALDFFA
Template Known Secondary structure 
TTSTTTB
TTTTT
S

SSS


TTTTT

..........B
TTGGG

BTTB
TSBT
Template Predicted Secondary structure 




























..........

















Template SS confidence 















































































   728.730.........740.........750.........760...... ...770.........780.........790.......
 
   436...440.........450.........460.........470.........480. ........490.........500.........510..
Predicted Secondary structure 










...








Query SS confidence 













































. . .






























Query Sequence  GKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALN. . . PKVIIADEAVSALDVSIRGQIINLLLDLQRD
Query Conservation             
   

           








 




   ...
 







  

      
   
  
   
Alig confidence 













































...






























Template Conservation                           
  








 





     










 

  
   
   
      
Template Sequence  SIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN
Template Known Secondary structure  S
TT
SSSBTT

GGG

SS


S

TTTT

T
Template Predicted Secondary structure 






























Template SS confidence 















































































   798.800.........810.........820.........830.........840.........850.........860.........870.......
 
   513......520.........530....... ..540.........550.........560...
Predicted Secondary structure 






......







Query SS confidence 
























. . . . . .

























Query Sequence  FGIAYLFISHDMAVVERISHRVAVM. . . . . . YLGQIVEIGPRRAVFENPQHPYTRKL
Query Conservation   
 


 



        


 

......  
 

  
        
    
  
Alig confidence  .















.






......

























Template Conservation  .
 


 




 

  . 
 
 

      
 
 


 
 
  
     
      
Template Sequence  . GDTVLVIEHNLDVIKT. ADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL
Template Known Secondary structure  .T



TT.
S
SSSTTS

SST
TT
Template Predicted Secondary structure  .




.

















Template SS confidence 
























































   878.880.........890... ......900.........910.........920.........930..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions