Job Description P75796 Confidence 97.27% Date Thu Jan 5 12:14:14 GMT 2012 Rank 144 Aligned Residues 125 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	L	W	P	G	E	T	L	S	L	V	G	E	S	G	S	G	K	S	T	T	G	R	A	L	L	R	L	V	E	S	Q	G	G	E	I	I	F	N	G	Q	R	I	D	T	L	S	P	G	K	L	Q	A	L	R	R	D	I	Q	F	I	F	Q	D	P	Y	A	S	L	D	P	R	Q	T	I	G	D	S
Query Conservation
Alig confidence																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	.	R	K	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	C	L	I	C	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S								S	T	T	S	S														.		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.																						.	130	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		I	I	E	P	L	R	V	H	G	L	L	P	G	K	D	A	A	A	R	V	A	W	L	L	E	R	V	G	L	L	P	E	H	A	W	R	Y	P	H	E	F	S	G	G	Q	R	Q	R	I	C	I	A	R	A	L	A	L	N	P	K	V	I	I	A	D	E	A	V	.	S	A	L	D	V	S	I	R	G	Q	I
Query Conservation																																																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.																					.	.	.																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	.	.	.	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S	S	S														T			.	.	.								S																T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
												139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	L	L	L	D	L	Q	R	D	F	G	I	A	Y	L	F	I
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		L	Q	V	A	N	A	I	.	.	.	Q	P	D	N	I	V	Y	V
Template Known Secondary structure									.	.	.			S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		206	.	.	.	210	.	.				.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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