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Job DescriptionP75796
Confidence100.00%DateThu Jan 5 12:14:14 GMT 2012
Rank14Aligned Residues262
% Identity30%Templatec1z47B_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  LRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP
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Template Sequence  IEFVGVEKIYP. . . . . . . . . . GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP
Template Known Secondary structure 

T..........TSTT

TT

STTSSTSS

STT
TT

G
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   15....20..... ....30.........40.........50.........60.........70.........80....
 
   394.....400.........410.........420.........430.........440.........450.........460.........470...
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Query Sequence  GKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC
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Template Sequence  QK. . . . . RNVGLVFQN. . YALFQHMTVYDNVSFGLREKR. VPKDEMDARVRELLRFMRL. ESYANRFPHELSGGQQQRVA
Template Known Secondary structure  GG.....SSTT..



TTS
TTGGGTT.

TT
.GGGTTS
GGGS
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   85. ...90..... ....100.........110...... ...120.........130..... ....140.........150.....
 
   474.....480.........490.........500.........510.........520.........530.........540.........550...
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Query Sequence  IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE
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Template Sequence  LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE
Template Known Secondary structure  TT

SSTTTTS


S

STT
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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   554.....560.........570.........580.........590....
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Query Sequence  NPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRG
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Template Sequence  KPGTLFVASFIGESNVWTRAVQNGRIEVAGAALPVDPAVSE
Template Known Secondary structure  S
SSSS


BTTSSS


TTS
T
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   236...240.........250.........260.........270......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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