Job Description P0A6E1 Confidence 99.47% Date Thu Jan 5 11:02:55 GMT 2012 Rank 90 Aligned Residues 163 % Identity 20% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.														.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	P	L	F	L	I	G	P	R	G	C	G	K	T	T	V	G	M	A	L	A	D	S	L	N	R	R	F	V	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	W	L	Q	S	Q	L	N	M	T	V	A	E	I	V	E	R	E	E	W	A	G	F	R	A	R	E	T	A	A	L	E	A	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	Y	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	R	K	K	T	Y	N	D	H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q	E	Q	L
Template Known Secondary structure										S	T	T	S													S		T	T	S						S	S		T	T	S											T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80														.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	P	S	T	V	I	A	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	L	T	E	F	N	R	H	F	M	Q	N	N	G	I	V	V	Y	L	C	A	P	V	S	V	L	V	N	R	L	Q	A	A	P	E	E	D	L	R	P	T	L	T	G	K	P	L	S	E	E	V	Q	E	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	G	I	T	L	I	V	D	R	Y	A	F	S	G	V	A	Y	A	A	A	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	P	K	P	D	L	V	I	F	L	E	S	G	S	K	E	I	N	R	N	V	G	E	E	.	.	.	.	.	.	.	.	.	.	I	Y	E	D	V	T	F	Q	Q	K	V
Template Known Secondary structure			T	T							S												T	T											T	T	S				S													T	T		B		S	S	.	.	.	.	.	.	.	.	.	.	T	T		B
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		L	E	E	R	D	A	L	Y	R	E	V	A	.	.	H	I	I	I	D	A	T	N	E	P	S	Q	V	I	S	E	I	R	S	A	L	A	Q	T	I	N	C
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		L	Q	E	Y	K	K	M	I	E	E	G	D	I	H	W	Q	I	I	S	S	E	F	E	E	D	V	K	K	E	L	I	K	N	I	V	I	E	A	I	H	T
Template Known Secondary structure											T		S	S							T	T	S																			S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions