Job Description P0A6E1 Confidence 99.05% Date Thu Jan 5 11:02:55 GMT 2012 Rank 117 Aligned Residues 117 % Identity 14% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	P	L	F	L	I	G	P	R	G	C	G	K	T	T	V	G	M	A	L	A	D	S	L	N	R	R	F	V	D	T	D	Q	W	L	Q	S	Q	L	N	M	T	V	A	E	I	V	E	R	E	E	W	A	G	F	R	A	R	E	T	A	A	L	E	A	V	T	A	P	S	T	V	I	A	T	G	G	G	I
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	V	V	V	A	V	G	F	P	G	A	G	K	S	T	F	I	Q	E	H	L	V	S	A	G	Y	V	H	V	N	R	D	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	W	Q	R	C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	V	V	I	D	N	T	N	P
Template Known Secondary structure											T	T	S	S									T	G	G	G	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S														T	T							S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																			.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		I	L	T	E	F	N	R	H	F	M	Q	N	.	.	.	.	.	N	G	I	V	V	Y	L	C	A	P	V	S	V	L	V	N	R	L	Q	A	A	P	E	E	D	L	R	P	T	L	T	G	K	P	L	S	E	E	V	Q	E	V	L
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		D	V	P	S	R	A	R	Y	I	Q	C	A	K	D	A	G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H	N	N	R	F	R	E	X	T	D	P	S	H	A	P	V	S	D	X	V	X	F	S	Y	R	K	Q	F
Template Known Secondary structure		S															T																											T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions