Job Description P0A6E1 Confidence 97.20% Date Thu Jan 5 11:02:55 GMT 2012 Rank 273 Aligned Residues 81 % Identity 21% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	P	L	F	L	I	G	P	R	G	C	G	K	T	T	V	G	M	A	L	A	D	S	L	.	.	.	.	.	N	R	R	F	V	D	T	D	.	.	.	.	.	.	.	.	.	.	Q	W	L	Q	S	Q	L	N	M	T	V	A	E	I	V	E	R	E	E	W	A	G	F	R	A	R	E	T	A	A	L	E
Query Conservation																											.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V
Template Known Secondary structure		S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	A	P	S	T	V	I	A	T	G	G	G	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G
Template Known Secondary structure			T	T		S									S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions