Job Description P0A6E1 Confidence 96.36% Date Thu Jan 5 11:02:55 GMT 2012 Rank 419 Aligned Residues 160 % Identity 7% Template c1kjwA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:postsynaptic density protein 95; PDBTitle: sh3-guanylate kinase module from psd-95 Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																				.
Predicted Secondary structure															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	P	L	F	L	I	G	P	R	G	C	G	.	K	T	T	V	G	M	A	L	A	D	S	L	N	R	R	F	V	D	T	D	Q	W	L	Q	S	Q	L	N	M	T	V	A	E	I	V	E	R	E	E	W	A	G	F	R	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	P	I	I	I	L	G	P	T	K	D	R	A	N	D	D	L	L	S	E	F	P	D	K	F	G	S	C	V	P	H	T	T	R	P	K	R	E	Y	E	I	D	G	R	D	Y	H	F	V	S	S	R	E	K	M	E	K	D	I	Q	A	H	K	F	I	E	A	G	Q	Y	N	S	H	L	Y	G	T	S	V
Template Known Secondary structure									S	T	T													T	T	T										S				T	T			B	T	T	T	B				S											T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	L	E	A	V	T	A	P	S	T	V	I	A	T	G	G	G	I	I	L	T	E	F	N	R	H	F	M	Q	N	N	G	I	V	V	Y	L	C	A	P	V	S	V	L	V	N	R	L	Q	A	A	P	E	E	D	L	R	P	T	L	T	G	K	P	L	S	E	E	V	Q	E	V	L	E	E	R	D	A
Query Conservation
Alig confidence																				.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	V	R	E	V	A	E	Q	G	K	H	C	I	L	D	V	S	.	.	A	N	A	V	R	R	L	Q	A	A	H	L	H	P	I	A	I	F	I	R	P	R	S	L	E	N	V	L	E	I	N	K	R	I	.	.	.	.	.	.	.	.	.	T	E	E	Q	A	R	K	A	F	D	R	A	T	K	L	E	Q
Template Known Secondary structure										T	T									.	.	T	T								T	T											S	S									T	T	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.			.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.										.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	E	V	A	H	I	I	I	D	A	T	N	E	P	S	Q	V	I	S	E	I	R	S	A	L	A	Q	T	I	N
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		E	F	T	E	C	F	S	A	I	V	E	G	D	.	S	F	E	E	I	Y	H	K	V	K	R	V	I	E	D	L	S	G
Template Known Secondary structure				G	G	G		S						S	.	S																S
Template Predicted Secondary structure															.
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.		.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions