Job Description P28249 Confidence 6.84% Date Thu Jan 5 11:44:34 GMT 2012 Rank 4 Aligned Residues 116 % Identity 9% Template d1ewfa1 SCOP info Aha1/BPI domain-like Bactericidal permeability-increasing protein, BPI Bactericidal permeability-increasing protein, BPI Resolution 1.70

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		497	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.			.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure																.																																	.	.
Query SS confidence																.																																	.	.
Query Sequence		T	T	D	L	T	L	K	D	G	V	V	T	L	N	.	D	M	Q	G	Q	S	P	V	L	A	L	T	G	E	G	M	L	N	L	A	D	Q	T	C	D	T	Q	F	D	I	R	V	.	.	V	G	G	W	N	G	E	S	K	L	I	D	F	L	K	E	T	P	V	P	L	R	V	Y	G	N	W	Q	Q	L	N
Query Conservation																.																																	.	.
Alig confidence																.																																	.	.																															.
Template Conservation																																																																																	.
Template Sequence		G	L	K	F	S	I	S	N	A	N	I	K	I	S	G	K	W	K	A	Q	K	R	F	L	K	M	S	G	N	F	D	L	S	I	E	G	M	S	I	S	A	D	L	K	L	G	S	N	P	T	S	G	K	P	T	I	T	C	S	S	C	S	S	H	I	N	S	V	H	V	H	I	S	K	S	K	V	G	W	.
Template Known Secondary structure																							T	T																										T	T	T	T																					S		G	G	G			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	L	Q	V	D	Q	L	L	R	K	H	L	Q	D	E	A	K	R	R	L	N	D	W	A	E	R	N	K	D	S	R	N	G	K	D	V	K	K	L	L	E	K	M
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	I	Q	L	F	H	K	K	I	E	S	A	L	R	N	K	M	N	S	Q	V	C	E	K	V	T	N	S	V	S	S	E	L	Q	P	Y	F	Q	T	L
Template Known Secondary structure		.	.	.	.									T																							T						T	T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions