Job Description P28249 Confidence 3.56% Date Thu Jan 5 11:44:34 GMT 2012 Rank 13 Aligned Residues 147 % Identity 18% Template c3h4zC_ PDB info PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein Resolution 2.35 Å

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		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.								.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		N	F	Q	Q	M	I	Q	Q	A	V	E	R	N	G	G	D	V	K	A	A	E	N	F	D	N	V	T	R	L	D	R	F	T	T	D	L	T	L	K	D	G	V	V	.	.	.	.	.	.	.	T	L	N	D	M	Q	G	Q	S	P	V	L	A	L	T	G	E	G	M	L	N	L	A	D	Q	T	C	D	T	Q
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence																														.															.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		E	I	N	K	A	V	D	E	A	V	A	A	I	E	K	S	E	T	F	D	P	M	K	V	P	D	H	S	.	D	K	F	K	G	E	L	D	M	R	N	I	Q	V	R	G	L	K	Q	M	K	R	V	G	D	A	N	V	K	S	E	D	G	V	V	K	A	H	L	L	V	G	V	H	D	D	V	V	S	M	E
Template Known Secondary structure																	S	S	S	S	S	S								.																	G	G	G					S								T	T												S	S
Template Predicted Secondary structure																														.
Template SS confidence
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.		.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.				.	.	580	.																.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	I	R	V	V	G	G	W	N	G	E	S	K	L	I	D	F	L	K	E	T	P	V	P	L	R	V	Y	G	N	W	Q	Q	L	N	Y	S	L	Q	.	.	.	V	D	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	K	H	L	Q	D	E	A	K	R	R	L	N	D	W	A	E
Query Conservation																																										.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																									.						.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																									.
Template Sequence		Y	D	L	A	Y	K	.	.	.	.	P	N	T	H	V	I	S	D	I	Q	D	F	V	V	E	L	S	L	E	V	S	E	E	G	.	N	M	T	L	T	S	F	E	V	R	Q	F	A	N	V	V	N	H	I	G	G	L	S	I	L	D	P	I	F	A	V	L	S	D	V	L	T	A	I	F	Q	D	T	V	R
Template Known Secondary structure								.	.	.	.										S	S											T	T		.													S							T	T			T	T																T	T	T
Template Predicted Secondary structure								.	.	.	.																									.
Template SS confidence
		1116	.	.	.	1120	.					.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.		.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	K	D	S	R	N	G	K	D	V	K	K	L	L	E	K	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	M	T	K	V	L	A	P	A	F	K	K	E	L	E	R	N
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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