Return to main results Retrieve Phyre Job Id

Job DescriptionP0CF83
Confidence52.16%DateThu Jan 5 11:31:41 GMT 2012
Rank389Aligned Residues32
% Identity6%Templated1smyf2
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.....
Predicted Secondary structure 








Query SS confidence 































Query Sequence  VFIEKHQAEFSIKAMCRVLRVARSGWYTWCQR
Query Conservation    
        
  
   






 
    
Alig confidence 































Template Conservation   

 
     
  


  



   
     
Template Sequence  MVLKLRKGLIDGEEVGAFFGVTRERIRQIENK
Template Known Secondary structure  TT



TTTSSSS
Template Predicted Secondary structure 







Template SS confidence 































   367..370.........380.........390........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions