Job Description P0CF83 Confidence 99.20% Date Thu Jan 5 11:31:41 GMT 2012 Rank 15 Aligned Residues 133 % Identity 23% Template d1hyva_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D	Y	Q	A	Q	L	K	R
Query Conservation
Alig confidence						.	.	.	.	.																									.																					.	.	.																			.	.	.	.	.
Template Conservation						.	.	.	.	.																									.																					.	.	.																			.	.	.	.	.
Template Sequence		W	Q	L	D	.	.	.	.	.	T	H	L	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	.	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	.	.	V	K	T	V	H	T	D	N	G	S	N	F	T	S	T	T	V	K	.	.	.	.	.
Template Known Secondary structure						.	.	.	.	.				T	T									T	T	T									.	S	S																	S		.	.	.							S		G	G	G	G		S					.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.																									.																					.	.	.																			.	.	.	.	.
Template SS confidence
		61	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q	F	E	N	K	N	L	A
Query Conservation
Alig confidence		.	.	.																															.	.																.									.	.	.	.
Template Conservation		.	.	.																															.	.																.									.	.	.	.
Template Sequence		.	.	.	A	A	W	W	A	G	I	K	Q	E	F	G	Q	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	.	.	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	.	F	I	H	N	K	K	R	K	.	.	.	.	G	G	Y	S	A	G	E	R	I	V	D	I	I	A
Template Known Secondary structure		.	.	.				T	T																										.	.	G	G	G	S	S	S										.									.	.	.	.
Template Predicted Secondary structure		.	.	.																															.	.																.									.	.	.	.
Template SS confidence
					128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions