Job Description P0CF83 Confidence 99.32% Date Thu Jan 5 11:31:41 GMT 2012 Rank 12 Aligned Residues 135 % Identity 23% Template d1cxqa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.02

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D
Query Conservation
Alig confidence																																													.																					.	.
Template Conservation																																													.																					.	.
Template Sequence		G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	.	T	S	V	A	A	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	.	.	A	I	K	T	D	N	G	S	C	F	T	S	K	S
Template Known Secondary structure		T	T	S													G	G	G	T	T	S									T	T	T									S	S		.																				S	.	.						S						S
Template Predicted Secondary structure																																													.																					.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	.	.	.	.	.	.	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R
Query Conservation																																											.	.	.	.	.	.
Alig confidence																			.	.	.	.																					.	.	.	.	.	.																	.
Template Conservation																			.	.	.	.																																											.
Template Sequence		T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	.	.	.	.	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	K	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	.	Y	A	L	N	H
Template Known Secondary structure										T									.	.	.	.																							T	T		S	S	S															.
Template Predicted Secondary structure																			.	.	.	.																																											.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions