Job Description P0CF83 Confidence 99.24% Date Thu Jan 5 11:31:41 GMT 2012 Rank 14 Aligned Residues 131 % Identity 21% Template d1c6va_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 3.00

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D	Y	Q	A
Query Conservation
Alig confidence																.	.	.	.																							.																		.	.	.
Template Conservation																.	.	.	.																							.																		.	.	.
Template Sequence		D	L	G	T	W	Q	M	D	C	T	H	L	E	G	.	.	.	.	K	I	V	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	.	T	G	R	Q	T	A	L	F	L	L	K	L	A	G	R	W	P	.	.	.	I	T	H	L	H	T	D	N	G	A	N	F	A	S	Q	E	V	K	M
Template Known Secondary structure			T	T										T	T	.	.	.	.									T	T	S									S	S		.	S													T	T	S		.	.	.										S	S	T	T	S	S
Template Predicted Secondary structure																.	.	.	.																							.																		.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.												.	.																			.						.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.												.	.																			.						.
Template Sequence		V	A	W	W	A	G	I	E	H	T	F	G	.	.	.	.	.	.	.	.	.	.	.	E	A	M	N	H	H	L	K	N	Q	I	.	.	D	R	I	R	E	Q	A	N	S	V	E	T	I	V	L	M	A	V	.	H	C	M	N	H	.	K	R	R	G	G	I	G	D	M	T	P	A	E
Template Known Secondary structure							T							.	.	.	.	.	.	.	.	.	.	.			T	T	T							.	.		T	T	T	T	S	S	S											.					S	.				S	S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.												.	.																			.						.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions