Job Description P0CF83 Confidence 99.60% Date Thu Jan 5 11:31:41 GMT 2012 Rank 5 Aligned Residues 155 % Identity 20% Template d1asua_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.70

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	D	F	Y	A	S	G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G
Query Conservation
Alig confidence																																																			.																					.	.
Template Conservation																																																			.																					.	.
Template Sequence		P	L	R	E	P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	.	T	S	V	A	A	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	.	.	A	I	K	T	D	N	G	S
Template Known Secondary structure					S	S	S	T	T	S													G	G	G	T	T	S									T	T	T									S	S		.																				S	.	.						S
Template Predicted Secondary structure																																																			.																					.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		Q	Y	C	S	A	D	Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	.	.	.	.	.	.	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.																			.							.
Template Conservation																																																																							.							.
Template Sequence		C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	K	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	.	Y	A	L	N	H	F	.	E	R	G
Template Known Secondary structure					S											T						S			S	S	S	S	S																						T	T		S	S	S															.					S		.		S
Template Predicted Secondary structure																																																																							.							.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.		200	.	.
		273	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	C	G	G	L	S	P
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		E	N	T	.	K	T	N
Template Known Secondary structure		T	T		.
Template Predicted Secondary structure					.
Template SS confidence
		203	.	.		.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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