Job Description P0CF83 Confidence 98.97% Date Thu Jan 5 11:31:41 GMT 2012 Rank 17 Aligned Residues 151 % Identity 16% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		F	Y	A	S	G	P	N	Q	K	W	A	G	D	I	T	.	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G	Q	Y	C
Query Conservation																	.
Alig confidence																	.																					.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		D	R	P	Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	.	.	.	.	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	N	V	L	T	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T
Template Known Secondary structure							T	T	S											S		B	T	T	B									T	T	T		.	.	.	.								S	S	S	S												T	T	T				S
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	D	Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q
Query Conservation
Alig confidence																																															.															.							.							.
Template Conservation																																															.															.							.							.
Template Sequence		S	S	T	F	A	E	W	A	K	E	R	G	I	H	L	E	F	S	T	P	Y	H	P	Q	S	S	G	K	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	.	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	.	L	A	L	N	N	T	.	Y	S	P	V	L	K	.	Y	T	P	H	Q
Template Known Secondary structure		S										T	T								T	T																								T	.	T	S	T	T		G	G	G	G						.					T	S	.			T	T	T	T	.
Template Predicted Secondary structure																																															.															.							.							.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.		.	.	.	260	.	.		.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions