Job Description P0CF83 Confidence 99.42% Date Thu Jan 5 11:31:41 GMT 2012 Rank 9 Aligned Residues 249 % Identity 14% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.								.	.	.	.	.	.	.	30	.	.	.	.	.												.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	V	F	I	E	K	H	Q	A	E	F	S	I	K	A	M	C	R	V	L	.	.	.	.	.	.	.	R	V	A	R	S	G	W	Y	T	W	C	Q	R	.	.	.	.	.	.	.	.	.	.	.	R	T	R	I	S	T	R	Q	Q	F	R	Q	H	C	D	S	V	V	L	A	A	F	T	R	S	K	Q	R
Query Conservation																							.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		R	T	V	L	I	F	C	F	H	L	K	K	T	A	A	E	S	H	R	M	L	V	E	A	F	G	E	Q	V	P	T	V	K	T	C	E	R	W	F	Q	R	F	K	S	G	D	F	D	V	D	D	K	E	H	G	K	P	P	K	R	Y	E	D	A	E	L	Q	A	L	L	D	E	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T														T		S		S															T	T				S	S										S	S												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																																.	.	110	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	A	P	R	L	T	D	E	L	R	A	Q	G	Y	P	F	N	V	K	T	V	A	A	S	L	R	R	Q	G	L	R	A	K	A	S	R	K	F	S	P	V	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	H	G	L
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	D	D	A	Q	T	Q	K	Q	L	A	E	Q	L	E	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S	F	L	H	R	I	V	T	G	D	E	K	W	I	F
Template Known Secondary structure		.	.	S	S									T	T	T	T	S												T	T										S																											G	G	G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	S	E	N	L	L	E	Q	D	F	Y	A	S	G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	N	P	K	R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N	R	A	L	Q	R	K	R	P	E	Y	R	V	I	F
Template Known Secondary structure		S	B										S	S	S											S	S												T	T										S	S																								S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		H	T	D	R	G	G	Q	Y	C	S	A	D	Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	.	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E
Query Conservation																																									.
Alig confidence																																						.			.									.
Template Conservation																																						.												.
Template Sequence		L	H	D	N	A	P	S	H	T	A	R	A	V	R	D	T	L	E	T	L	N	W	E	V	L	P	H	A	A	Y	S	P	D	L	A	P	.	S	D	Y	H	L	F	A	S	M	G	H	.	A	L	A	E	Q	R	F	D	S	Y	E	S	V	K	K	W	L	D	E	W	F	A
Template Known Secondary structure							S	T	T	S										T	T									T	T		T	T	S			.				T								.		T	T	T		B		S	S
Template Predicted Secondary structure																																						.												.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions