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Job DescriptionP0CF83
Confidence98.51%DateThu Jan 5 11:31:41 GMT 2012
Rank18Aligned Residues138
% Identity17%Templatec3dlrA_
PDB info PDB header:transferaseChain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   126...130..... ....140.........150.........160.........170.........180.........190.........200....
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Query Sequence  SGPNQKWAGD. ITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSAD
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Template Sequence  QKPFDKFFIDYIGPLPPSQGYLYVLVVVDGXTGFTWLYPTKAPSTSATV. . . . KSLNVLTSIAIPKVIHSDQGAAFTSST
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TTS


S
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S
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   119120.........130.........140.........150.........160....... ..170.........180.........190....
 
   205....210.........220.........230.........240.........250.........260.........270.........280.
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Query Sequence  YQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQ
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Template Sequence  FAEWAKERGIHL. . . . . . . . . . EFSVERKNSDIKRLLTKLLV. GRPTKWYDLLPVVQ. LALNNT. YSPVLK. YTPHQ
Template Known Secondary structure  T
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T.T
GGG.TS.

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   195....200...... ...210.........220...... ...230.........240 ...... ...250.. .....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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