Job Description P0CF83 Confidence 81.73% Date Thu Jan 5 11:31:41 GMT 2012 Rank 242 Aligned Residues 93 % Identity 8% Template c1iufA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:centromere abp1 protein; PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.							.	.	.	.	.	.	.	30	.	.	.	.																	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure													.	.	.											.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.											.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	V	F	I	E	K	H	Q	A	E	.	.	.	F	S	I	K	A	M	C	R	V	L	.	.	.	.	.	.	R	V	A	R	S	G	W	Y	T	W	C	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	T	R	I	S	T	R	Q	Q	F	R	Q	H	C	D	S	V	V	L	A	A
Query Conservation													.	.	.											.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.											.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	A	L	R	H	Y	F	F	Q	L	Q	N	R	S	G	Q	Q	D	L	I	E	W	F	R	E	K	F	G	K	D	I	S	Q	P	S	V	S	Q	I	L	S	S	K	Y	S	Y	L	D	N	T	V	E	K	P	W	D	V	K	R	N	R	P	P	K	Y	P	L	L	E	A	A	L	F	E	W	Q	V	Q	Q
Template Known Secondary structure											S	S	S	S																S	S			S	S	S	S	T	T										T	T	T	S		S	S	S	S	S	S	S						S															T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence		F	T	R	S	K	Q	R	Y	G	A	P	R	L	T	D	E	L	R	A	Q	G	Y	P	F	.	.	.	.	.	.	.	.	.	N	V	K	T	V	A	A	S	L	R	R	Q	G	L
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	D	A	T	L	S	G	E	T	I	K	R	A	A	A	I	L	W	H	K	I	P	E	Y	Q	D	Q	P	V	P	N	F	S	N	G	W	L	E	G	F	R	K	R	H	I	L
Template Known Secondary structure			T	T				S	S															S	S	S	S						S			S										T	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions