Job Description P0CF83 Confidence 96.91% Date Thu Jan 5 11:31:41 GMT 2012 Rank 25 Aligned Residues 92 % Identity 17% Template c1hlvA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	V	F	I	E	K	H	Q	A	E	.	.	F	S	I	K	A	M	C	R	V	L	R	V	A	R	S	G	W	Y	T	W	C	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	R	I	S	T	R	Q	Q	F	R	Q	H	C	D	S	V	V	L	A	A	F	T	R	S	K	Q	R	Y
Query Conservation													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	R	I	I	Q	E	V	E	E	N	P	D	L	R	K	G	E	I	A	R	R	F	N	I	P	P	S	T	L	S	T	I	L	K	N	K	R	A	I	L	A	S	E	R	K	Y	G	V	A	S	T	C	R	K	T	N	K	L	S	P	Y	D	K	L	E	G	L	L	I	A	W	F	Q	Q	I	R	A	A	G
Template Known Secondary structure													T	T	S										T												T												G	G	G	G	G	T								T	T															G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		65	.											.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	.	.	.	.	.	.	.	.	.	.	P	R	L	T	D	E	L	R	A	Q	G	Y	P	F	N	V	K	T	V	A	A	S	L	R	R	Q	G
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	V	K	G	I	I	L	K	E	K	A	L	R	I	A	E	E	L	G	M	D	D	F	T	A	S	N	G	W	L	D	R	F	R	R	R	R	S
Template Known Secondary structure																					T		T	T															T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions