Job Description P0CF83 Confidence 99.38% Date Thu Jan 5 11:31:41 GMT 2012 Rank 10 Aligned Residues 140 % Identity 23% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	R	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D	Y
Query Conservation
Alig confidence						.										.	.	.	.																									.																		.	.	.
Template Conservation						.										.	.	.	.																									.																		.	.	.
Template Sequence		S	S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	.	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	.	.	V	K	T	I	H	T	D	N	G	S	N	F	T	G	A	T	V
Template Known Secondary structure			G	G	G	.										.	.	.	.	T	T									T	T	T									S	S	S	.	S	T	T													S		.	.	.
Template Predicted Secondary structure						.										.	.	.	.																									.																		.	.	.
Template SS confidence
		56	.	.	.		60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q
Query Conservation
Alig confidence														.	.	.																														.	.													.					.
Template Conservation														.	.	.																														.	.													.					.
Template Sequence		R	A	A	C	D	W	A	G	I	K	Q	E	.	.	.	D	G	I	P	Q	S	Q	G	V	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	.	H	N	K	K	.	R	K	G	G	I	G	G	Y	S	A	G	E
Template Known Secondary structure						T	T	T	T					.	.	.						S	S																		G	G	G		S	.	.	S	S											.					.		S	S	S	S	S
Template Predicted Secondary structure														.	.	.																														.	.													.					.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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