Phyre 2 alignment of P77444 with d1h0ca

Job Description P77444
Confidence 100.00% Date Thu Jan 5 12:29:21 GMT 2012

Rank 22 Aligned Residues 370

% Identity 17% Template d1h0ca_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.5

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	F	S	V	D	K	V	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Sequence	V	T	P	P	K	A	L	L	K	P	L	.	.	.	.	.	.	.	.	S	I	P	N	Q	L	L	L	G	P	G	P	S	N	L	P	P	R	I	M	A	A	G	G	L	Q	M	.	.	.	.	.	.	.	.	.	.	I	G	S	M	S	K	D	M	Y	Q	I	M	D	E	I	K	E	G	I	Q	Y	V	F	Q
Template Known Secondary structure	S				G	G	G	G	S			.	.	.	.	.	.	.	.									S	S	S													T				.	.	.	.	.	.	.	.	.	.			T	T	S																			T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.									.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	R	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F
Query Conservation
Alig confidence																									.	.	.	.																									.	.	.	.
Template Conservation																									.	.	.	.																									.	.	.	.
Template Sequence	T	R	N	P	L	T	L	V	I	S	G	S	G	H	C	A	L	E	A	A	L	V	N	V	.	.	.	.	L	E	P	G	D	S	F	L	V	G	A	N	G	I	W	G	Q	R	A	V	D	I	G	E	.	.	.	.	R	I	G	V	H	P	M	T	K	D	P	G	G	H	Y	T	L	Q	E	V	E	E	G	L
Template Known Secondary structure				S						S	S														.	.	.	.			S	S							B	S	S												.	.	.	.					B			B			T	T
Template Predicted Secondary structure																									.	.	.	.																									.	.	.	.
Template SS confidence
	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

	162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																																																	.
Query SS confidence			.																																																																	.
Query Sequence	D	E	.	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	.	Y	G	P	T	G	I	G	I	L	Y	V	K
Query Conservation			.																																																																	.
Alig confidence			.																																																																	.
Template Conservation
Template Sequence	A	Q	H	K	P	V	L	L	F	L	T	H	G	E	S	S	T	G	V	L	Q	P	L	D	G	F	G	E	L	C	H	R	Y	K	C	L	L	L	V	D	S	V	A	S	L	G	G	T	P	L	Y	M	D	R	Q	G	I	D	I	L	Y	S	G	S	Q	K	A	L	N	A	P	P	G	T	S	L	I	S	F	S
Template Known Secondary structure						S						S			T	T	T	T						T	T							T	T	T								T	T	T	T	T	T	S				T	T	T	T	T		S						S	S	S	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	.	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence	D	K	A	K	K	K	M	Y	S	R	K	T	K	P	F	S	F	Y	L	D	I	K	W	L	A	N	F	W	G	C	D	D	Q	P	R	M	Y	H	H	T	I	P	V	I	S	L	Y	S	L	R	E	S	L	A	L	I	A	E	Q	G	L	E	N	S	W	R	Q	H	R	E	A	A	A	Y	L	H	G	R	L	Q
Template Known Secondary structure								T	T		S	S			S		S	T	T									T	T		S	S	S						S
Template Predicted Secondary structure
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

	319	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure														.	.	.										.															.																												.
Query SS confidence														.	.	.										.															.																												.
Query Sequence	S	V	P	D	L	T	L	Y	G	P	Q	N	R	.	.	.	L	G	V	I	A	F	N	L	G	.	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	.	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	.	L	A	M	Y	N	T	H	E	E	V	D
Query Conservation														.	.	.										.															.																												.
Alig confidence			.											.	.	.										.															.												.	.	.	.	.	.	.	.									.
Template Conservation			.																																																		.	.	.	.	.	.	.	.
Template Sequence	A	L	.	G	L	Q	L	F	V	K	D	P	A	L	R	L	P	T	V	T	T	V	A	V	P	A	G	Y	D	W	R	D	I	V	S	Y	V	I	D	H	F	D	I	E	I	M	G	G	L	G	P	S	.	.	.	.	.	.	.	.	T	G	K	V	L	R	I	G	L	L	G	C	N	A	T	R	E	N	V	D
Template Known Secondary structure			.	T			B	S	S		S	G	G	G	B		T	T								T	T																							G	G	G	.	.	.	.	.	.	.	.	T	T	T								G	G	G		S
Template Predicted Secondary structure			.																																																		.	.	.	.	.	.	.	.
Template SS confidence
	304	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.									.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

	393	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	V	T	G	L	Q	R	I	H	R	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	V	T	E	A	L	R	A	A	L	Q	H	C	P
Template Known Secondary structure													S
Template Predicted Secondary structure
Template SS confidence
	375	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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