Job Description P77444 Confidence 99.93% Date Thu Jan 5 12:29:21 GMT 2012 Rank 174 Aligned Residues 337 % Identity 17% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	.	.	.	.	.	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S
Template Known Secondary structure				B		T	T	S		B												T	S		G	G	G	T	S	S				T	T		.	.	.	.	.														G	G	G			S	S								S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																															.															.	.	.	.	.	.
Query SS confidence																																															.															.	.	.	.	.	.
Query Sequence		W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	.	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	.	.	.	.	.	.	K	T	R	L	L	A	I	T	H	V	S	N	V	L
Query Conservation																																															.															.	.	.	.	.	.
Alig confidence			.	.	.	.																									.	.	.	.													.															.	.	.	.	.	.
Template Conservation			.	.	.	.																									.	.	.	.
Template Sequence		Y	.	.	.	.	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	.	.	.	.	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T
Template Known Secondary structure		T	.	.	.	.	S		S	S							S	S			T										.	.	.	.	T									B		S	S	S	S	B															S		S									S	S		T	T	T
Template Predicted Secondary structure			.	.	.	.																									.	.	.	.
Template SS confidence
		118					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		178	.	180	.				.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.
Predicted Secondary structure						.	.	.												.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence						.	.	.												.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		G	T	E	N	.	.	.	P	L	A	E	M	I	T	L	A	H	Q	.	.	.	.	.	.	H	G	A	K	V	L	V	D	G	A	Q	.	.	.	.	.	.	.	.	.	.	.	A	V	M	H	H	P	V	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	I
Query Conservation						.	.	.												.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																														.	.
Alig confidence						.	.	.												.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A
Template Known Secondary structure															T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T														T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	.	.	.	.	.	.	.	.	.	.	.	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T
Template Known Secondary structure							S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.												.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V
Query Conservation
Alig confidence							.										.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation							.										.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		A	A	K	E	N	.	K	L	T	X	I	P	Y	F	G	.	G	F	F	T	F	I	P	T	D	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	K	G	I	R	V	A	I	C	.	G	V	G	E	E	K	I	P	K	L	V
Template Known Secondary structure							.	T								S	.	S	S							S	.	.											T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.		S	S						S	T	.	T	S		T	T	T
Template Predicted Secondary structure							.										.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		339	340	.	.	.		.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.														380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400
		396	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	Q	R	I	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	L	A	F	Y	T	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions