Job Description P77444 Confidence 99.94% Date Thu Jan 5 12:29:21 GMT 2012 Rank 159 Aligned Residues 341 % Identity 13% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	.	.	.	.	.	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N
Template Known Secondary structure				B		T	T	S		B												T								S				T	T		.	.	.	.	.														G	G	G			S	S								S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																												.																.	.	.	.	.	.
Query SS confidence																																												.																.	.	.	.	.	.
Query Sequence		W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	.	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F	.	.	.	.	.	.	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L
Query Conservation																																												.																.	.	.	.	.	.
Alig confidence			.	.	.	.																									.	.	.	.										.																.	.	.	.	.	.
Template Conservation			.	.	.	.																									.	.	.	.
Template Sequence		Y	.	.	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	.	.	.	.	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T
Template Known Secondary structure			.	.	.	.	S		T	T							S	S			T									T	.	.	.	.	T								S	B		T	T	S	S	B																	S									S	S		T	T	T
Template Predicted Secondary structure			.	.	.	.																									.	.	.	.
Template SS confidence
		119					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		178	.	180	.	.	.	.	.	.	.	.	.	190										.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210												.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		G	T	E	N	P	L	A	E	M	I	T	L	A	.	.	.	.	.	.	.	.	.	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	.	.	.	.	.	.	.	.	.	.	.	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	I
Query Conservation															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A
Template Known Secondary structure																							T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	.	.	.	.	.	.	.	.	.	.	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q
Template Known Secondary structure							S	S																			T	S	S					.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V
Query Conservation
Alig confidence							.															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation							.															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		E	A	A	Q	V	.	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	.	.	.	I	P	T	D	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	N	G	I	R	I	A	A	.	C	G	I	P	K	C	Q	X	T	G	L	A
Template Known Secondary structure							.	T								S	S	S				.	.	.				T	T											T	T						.	.	.	.	.	.	.	.	.	.	.	.	.		S	S						G	.	G	G	S						T	T
Template Predicted Secondary structure							.															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		341	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.														.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.
		396	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	Q	R	I	H	R	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	I	Y	N	A	X	K	S	L	G
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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