Job Description P77444 Confidence 99.96% Date Thu Jan 5 12:29:21 GMT 2012 Rank 119 Aligned Residues 344 % Identity 14% Template c3pdxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase Resolution 2.91 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																																																			.	.	.	.
Query SS confidence																			.	.	.	.	.																																																			.	.	.	.
Query Sequence		R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	.	.	.	.	.	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	.	.	.	.	S	A	E	E
Query Conservation																			.	.	.	.	.																																																			.	.	.	.
Alig confidence																			.	.	.	.	.																	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		K	P	N	P	N	K	T	V	I	S	L	S	I	G	D	P	T	V	F	G	N	L	P	T	D	P	E	V	T	Q	A	M	K	D	A	L	D	S	.	.	.	.	.	.	.	.	G	K	Y	N	G	Y	A	P	S	I	G	Y	L	S	S	R	E	E	V	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D
Template Known Secondary structure					T	T	S						S				T	T	S	S	S	S	S																T	.	.	.	.	.	.	.	.	T		S	S	S				T	T													T			S	S	S				G	G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	.	.	T	L	Q	L	E	T	L	P	T	L	F	D	E	K	T
Query Conservation																																																																	.	.
Alig confidence																				.	.	.	.																									.	.	.	.														.	.
Template Conservation																				.	.	.	.																									.	.	.	.
Template Sequence		V	I	L	T	S	G	C	S	Q	A	I	E	L	C	L	A	V	L	.	.	.	.	A	N	P	G	Q	N	I	L	I	P	R	P	G	F	S	L	Y	R	T	L	A	E	S	M	.	.	.	.	G	I	E	V	K	L	Y	N	L	L	P	E	K	S	W	E	I	D	L	K	Q	L	E	S	L	I	D	E	K	T
Template Known Secondary structure						S	S											T	T	.	.	.	.			S	S							S	S													.	.	.	.	T										G	G	G	T	T									T	T			S	S
Template Predicted Secondary structure																				.	.	.	.																									.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.
Predicted Secondary structure																	.	.	.																									.	.	.	.	.	.																													.	.
Query SS confidence																	.	.	.																									.	.	.	.	.	.																													.	.
Query Sequence		R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	.	.	.	N	P	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	.	.	.	.	.	.	V	M	H	H	P	V	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G
Query Conservation																	.	.	.																									.	.	.	.	.	.																													.	.
Alig confidence																	.	.	.																									.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		A	C	L	V	V	N	N	P	S	N	P	C	G	S	V	F	S	K	R	H	L	Q	K	I	L	A	V	A	E	R	Q	C	V	P	I	L	A	D	E	I	Y	G	D	M	V	F	S	D	C	K	Y	E	P	M	A	T	L	S	T	N	V	P	I	L	S	C	G	G	L	A	R	W	L	V	P	G	W	R	L	G
Template Known Secondary structure								S	S		T	T	T																	T	T	T	T								T	T	T	T		B		S	S	S					G	G	G	G		S	S								B					S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	I	L	I	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	D	I	F	G	N	E	I	R	D	G	L	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G	A	L	K	S	I	L	Q	R	T	P	Q	E	F	Y	Q	D	T	L	S	F	L	K	S	N	A	D	L	C	Y
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	S													T	T	T			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.																	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.											.
Query SS confidence																													.	.	.	.	.	.											.
Query Sequence		S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	.	.	.	.	.	.	H	H	A	Y	D	V	G	S	F	L	.	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T
Query Conservation																													.	.	.	.	.	.											.
Alig confidence																		.											.	.	.	.	.	.											.														.	.	.	.	.	.	.	.												.	.
Template Conservation																		.																																									.	.	.	.	.	.	.	.												.	.
Template Sequence		G	A	L	S	A	I	P	G	L	Q	P	V	R	P	S	G	.	A	M	Y	L	M	V	G	I	E	M	E	H	F	P	E	F	E	N	D	V	E	F	T	E	R	L	I	A	E	Q	S	V	H	C	L	P	A	T	C	F	.	.	.	.	.	.	.	.	E	Y	P	N	F	F	R	V	V	I	T	.	.	V	P
Template Known Secondary structure							S	T	T	B			B				B	.	T	T						B		T	T	S			S		S	S																			G	G	G	G	.	.	.	.	.	.	.	.	T			S						S		.	.	S
Template Predicted Secondary structure																		.																																									.	.	.	.	.	.	.	.												.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410									.	.	.	.	.	.	.	.	.	420	.			.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	M	M	L	E	A	C	S	R	I	Q	E	F	C	E
Template Known Secondary structure																	T
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions