Job Description P77444 Confidence 99.95% Date Thu Jan 5 12:29:21 GMT 2012 Rank 151 Aligned Residues 349 % Identity 13% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.			.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.						.	.
Query SS confidence																																																													.	.	.	.	.						.	.
Query Sequence		A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	.	.	.	.	.	S	A	E	E	L	.	.	V	F	V	R	G	T	T	E	G
Query Conservation																																																													.	.	.	.	.						.	.
Alig confidence																																								.	.	.	.	.	.																.	.	.	.	.						.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	.	.	.	.	.	.	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S
Template Known Secondary structure						T	T	S																	S		T	T	T	S			S				T	T		.	.	.	.	.	.															T	T						T	T								S
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.
Predicted Secondary structure																																																		.	.	.																						.	.	.
Query SS confidence																																																		.	.	.																						.	.	.
Query Sequence		I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	.	.	.	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	K	T	R	.	.	.	L	L	A	I	T
Query Conservation																																																		.	.	.																						.	.	.
Alig confidence												.	.																																					.	.	.																						.	.	.
Template Conservation												.	.
Template Sequence		L	H	I	G	F	E	F	L	H	L	.	.	W	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A
Template Known Secondary structure												.	.			T	T							S	S			T												T	T	T	S								B		T	T	S		S	S	B												S		T	T							S
Template Predicted Secondary structure												.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.											.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.
Predicted Secondary structure													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		H	V	S	N	V	L	G	T	E	N	P	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	.	.	.	.	.	.	.	.	.	.	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	I	L
Query Conservation													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L
Template Known Secondary structure		S	S		T	T	T																				T								S		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	.	.	.	.	.	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H
Query Conservation																																																													.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		H	V	V	H	A	G	V	E	G	S	V	E	K	.	.	.	.	.	.	.	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S
Template Known Secondary structure							S		S	S	S				.	.	.	.	.	.	.																		T	T	T	S	S														T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	.	.	.	.	.	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N
Query Conservation																											.	.	.	.	.
Alig confidence											.																.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation											.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		L	L	H	A	S	L	A	K	R	.	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	A	G	G	R	M	S	M	C	G	.	L
Template Known Secondary structure										T	.	T				S	T	T	T	T			T							S	S																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	G	G	G				G	G	G	.
Template Predicted Secondary structure											.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		342	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.																.	.	.	.	.	.	.	400	.	.	.		.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K	L
Template Known Secondary structure			T	T	T															S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions