Job Description P77444 Confidence 99.86% Date Thu Jan 5 12:29:21 GMT 2012 Rank 220 Aligned Residues 341 % Identity 14% Template c3l44A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase Resolution 2.05 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		N	G	L	P	L	A	Y	L	D	S	A	A	S	.	.	.	.	.	.	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	S	A	E	E	L	V	F	V	R	G
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		D	V	D	G	N	K	Y	I	D	Y	L	A	A	Y	G	P	I	I	T	G	H	A	H	P	H	I	T	K	A	I	T	T	A	A	E	N	G	V	L	Y	G	T	P	.	.	.	.	.	.	.	.	.	T	A	L	E	V	K	F	A	K	X	L	K	E	A	X	P	A	.	.	L	D	K	V	R	F	V	N	S
Template Known Secondary structure			T	T									G	G	G	T	T		S	S		B	T																S			S	S		.	.	.	.	.	.	.	.	.																T	T	.	.		S						S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.
Predicted Secondary structure																																																										.	.	.	.														.	.	.
Query SS confidence																																																										.	.	.	.														.	.	.
Query Sequence		T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	.	.	.	.	G	T	L	Q	L	E	T	L	P	T	L	F	D	.	.	.	E	K	T	R
Query Conservation																																																										.	.	.	.														.	.	.
Alig confidence																.	.																																									.	.	.	.														.	.	.
Template Conservation																.	.
Template Sequence		G	T	E	A	V	X	T	T	I	R	V	A	R	A	.	.	Y	T	G	R	T	K	I	X	K	F	A	G	C	Y	H	G	H	S	D	L	V	L	V	A	L	G	T	P	D	S	A	G	V	P	Q	S	I	A	Q	E	V	I	T	V	P	F	N	N	V	E	T	L	K	E	A	L	D	K	W	G	H	E	V	A
Template Known Secondary structure																.	.											T	T					S	S	G	G	G	G	B					B	S	S	T	T							T	T						T	T													G	G	G
Template Predicted Secondary structure																.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																		.	.	.	.																																	.	.
Query SS confidence																		.	.	.	.																																	.	.
Query Sequence		L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	.	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	A	.	.	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	I	G	I	L	Y	V	K	E
Query Conservation																		.	.	.	.																																	.	.
Alig confidence																		.	.	.	.																																	.	.
Template Conservation
Template Sequence		A	I	L	V	E	P	I	V	G	N	F	G	I	V	E	P	K	P	G	F	L	E	K	V	N	E	L	V	H	E	A	G	A	L	V	I	Y	D	E	V	I	T	A	F	R	F	X	Y	G	G	A	Q	D	L	L	G	V	T	P	D	L	T	A	L	G	V	I	G	G	G	L	P	I	G	A	Y	G	G	K	K
Template Known Secondary structure							S	S	B		T	T	S		B				T	T											T	T	T								T	T	T	T	T	T	S	S	S	S							T				S							T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	X	E	Q	V	A	P	L	G	P	A	Y	Q	A	G	T	X	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	P	A	S	X	A	S	G	I	A	C	L	E	V	L	Q	Q	E	G	L	Y	E	K	L	D	E	L	G	A	T	L	E	K	G	I	L	E	Q	A	A	K	H
Template Known Secondary structure					T	T	B	T	T	T	S	S	B					T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																T	S	T	T																							T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.																			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.													.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	D	I	T	L	N	R	L	K	G	A	L	T	V	Y	F	T	T	N	T	I	E	D	Y	D	A	A	Q	D	T	D	G	E	X	F	G	K	F	F	K	L	X	L	Q	E	G	V	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	S	K	Y	E	A	W	F	L	T	T	E	H	T	K
Template Known Secondary structure		T									T	T							S	S	S				S							S															T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T							T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.															.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	I	E	Y	T	I	E	A	V	G	R	A	F	A	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions