Job Description P77444 Confidence 99.97% Date Thu Jan 5 12:29:21 GMT 2012 Rank 79 Aligned Residues 344 % Identity 17% Template c3h14A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		F	S	V	D	K	V	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	.	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N
Query Conservation																																	.
Alig confidence																		.	.														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	V	X	D	V	X	E	A	A	R	R	A	E	E	A	.	.	G	R	R	I	I	H	X	E	V	G	Q	P	G	T	G	A	P	R	G	A	V	E	A	L	A	K	S	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	A	L	R	Q	R	I	A	R	L	Y	G	E	W	Y	G
Template Known Secondary structure			T	T													T	.	.	T									S	S		S	S		S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		82	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		A	R	.	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L
Query Conservation				.
Alig confidence				.																							.	.	.	.																									.	.	.	.																			.
Template Conservation																											.	.	.	.																									.	.	.	.																			.
Template Sequence		V	D	L	D	P	G	R	V	V	I	T	P	G	S	S	G	G	F	L	L	A	F	T	A	L	.	.	.	.	F	D	S	G	D	R	V	G	I	G	A	P	G	Y	P	S	Y	R	Q	I	L	R	A	L	.	.	.	.	G	L	V	P	V	D	L	P	T	A	P	E	N	R	L	Q	P	V	.	P	A	D	F
Template Known Secondary structure						G	G	G					S	S													.	.	.	.			T	T								S												T	.	.	.	.	T										G	G	G	T	T	S			.
Template Predicted Secondary structure																											.	.	.	.																									.	.	.	.																			.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																											.	.	.																				.	.	.	.																													.
Query SS confidence																											.	.	.																				.	.	.	.																													.
Query Sequence		F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	L	A	E	.	.	.	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	.	.	.	.	V	M	H	H	P	V	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.
Query Conservation																											.	.	.																				.	.	.	.																													.
Alig confidence																											.	.	.																				.	.	.	.																													.
Template Conservation
Template Sequence		A	G	L	D	L	A	G	L	X	V	A	S	P	A	N	P	T	G	T	X	L	D	H	A	A	X	G	A	L	I	E	A	A	Q	A	Q	G	A	S	F	I	S	D	E	I	Y	H	G	I	E	Y	E	A	K	A	V	T	A	L	E	L	T	D	E	C	Y	V	I	N	S	F	S	K	Y	F	S	X	T	G	W
Template Known Secondary structure		T	T	S			S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S					G	G	G	T		S	S	S						S	S	S	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
			233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H
Query Conservation		.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		R	V	G	W	X	V	V	P	E	D	Q	V	R	V	V	E	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	N	X	F	I	C	A	P	H	A	S	Q	V	A	A	L	A	A	L	D	.	.	C	D	A	E	L	Q	A	N	L	D	V	Y	K	A	N	R	K
Template Known Secondary structure										G	G	G								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T															T	T	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																.
Query SS confidence																											.																.
Query Sequence		Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	.	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	.	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E
Query Conservation																											.																.
Alig confidence																											.																.																	.	.	.	.	.												.	.
Template Conservation																																																												.	.	.	.	.												.	.
Template Sequence		L	X	L	E	R	L	P	K	A	G	F	T	R	I	A	P	P	D	G	A	F	Y	V	Y	A	D	V	S	D	L	T	D	D	S	R	A	F	A	A	E	I	L	E	K	A	G	V	A	V	T	P	G	L	D	F	D	P	E	.	.	.	.	.	R	G	A	G	T	L	R	F	S	Y	A	.	.	R	A	T	A
Template Known Secondary structure											T				B					B	T	T							T	T	T		S																				G	G	G	T		T	T	.	.	.	.	.	T	G	G	G								.	.	S
Template Predicted Secondary structure																																																												.	.	.	.	.												.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.			.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	D	R	L	V	T	G	L	Q	R	I	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	E	E	G	L	D	R	L	E	A	F	X	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions