Job Description P77444 Confidence 99.96% Date Thu Jan 5 12:29:21 GMT 2012 Rank 136 Aligned Residues 365 % Identity 11% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		V	D	K	V	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence										.	.	.	.	.	.	.	.															.																																															.	.	.
Template Conservation										.	.	.	.	.	.	.	.															.
Template Sequence		I	T	R	L	X	E	D	L	.	.	.	.	.	.	.	.	N	D	G	A	I	X	L	G	G	G	N	P	A	H	.	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	N	Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L
Template Known Secondary structure										.	.	.	.	.	.	.	.								S							.																			T								S	T	T		T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.															.
Template SS confidence
		16	.	.	.	20	.	.	.									.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
					82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	R	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P
Query Conservation		.	.	.
Alig confidence		.	.	.		.																							.	.	.	.																.	.
Template Conservation						.																							.	.	.	.																.	.
Template Sequence		G	W	D	I	.	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	.	.	.	.	A	G	R	S	T	K	K	V	L	F	P	L	A	P	E	.	.	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H
Template Known Secondary structure						.		G	G	G					S														.	.	.	.	S	B				B					S	S				.	.																				G	G	G								G	G	G
Template Predicted Secondary structure						.																							.	.	.	.																.	.
Template SS confidence
		92	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.																																	.	.	.	.	.												.
Query SS confidence																														.	.	.																																	.	.	.	.	.												.
Query Sequence		T	L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	L	A	E	M	.	.	.	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	A	L	D	C	D	.	.	.	.	.	F	Y	V	F	S	G	H	K	L	Y	G	.
Query Conservation																														.	.	.																																	.	.	.	.	.												.
Alig confidence																														.	.	.																																	.	.	.	.	.												.
Template Conservation
Template Sequence		L	H	I	G	E	E	T	G	X	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	I	L	C	X	S	L	S	K	L	G	L	P
Template Known Secondary structure						T	T								S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	G	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	R	C	G	I	I	I	A	N	D	K	T	I	T	A	I	A	N	X	N	G	I	I	S	L	A	P	G	G	X	G	P	A	X	X	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T
Template Known Secondary structure		T	S																												S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T									T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	.	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H
Query Conservation																																																																	.
Alig confidence																																																																	.													.	.
Template Conservation																																																																														.	.
Template Sequence		I	A	I	I	R	R	Y	L	S	E	E	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	E	L	L	Y	Q	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y	V	P	.	.	E	P
Template Known Secondary structure											T	T	T								B	S	S							T	T		S	S												T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S		S	.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	I	E	A	G	V	K	I	L	A	E	E	I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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