Job Description P77444 Confidence 99.97% Date Thu Jan 5 12:29:21 GMT 2012 Rank 83 Aligned Residues 376 % Identity 14% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.															.
Query SS confidence																				.	.															.
Query Sequence		I	F	S	V	D	K	V	R	A	D	F	P	V	L	S	R	E	V	.	.	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	.	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L
Query Conservation																				.	.															.
Alig confidence																				.	.															.																	.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		D	L	G	X	A	S	I	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	.	.	.	.	G	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L
Template Known Secondary structure			G	G	G																		T										S			S																	.	.	.	.	T	G	G	G	S				T	T
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		79	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.
Predicted Secondary structure							.																																	.	.	.	.																																				.	.
Query SS confidence							.																																	.	.	.	.																																				.	.
Query Sequence		F	I	N	A	R	.	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	.	.	.	.	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	.	.	T
Query Conservation							.																																	.	.	.	.																																				.	.
Alig confidence							.																							.	.	.	.							.	.	.	.																			.	.	.	.														.	.
Template Conservation																														.	.	.	.																													.	.	.	.
Template Sequence		F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	.	.	.	.	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	.	.	.	.	G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K
Template Known Secondary structure									G	G	G					S														.	.	.	.	T	T	S		T	T		S								S													.	.	.	.	T								G	G	G	G		T	T
Template Predicted Secondary structure																														.	.	.	.																													.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210													.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	L	E	T	L	P	T	L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	L	.	.	.	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	.	.	.	.	.	.	.	.	.	.	.	.	D	V	Q	A	L	D
Query Conservation																																		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	E	K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T
Template Known Secondary structure											T	T	T									S	S		T	T	T																			T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V
Query Conservation																		.	.
Alig confidence																		.	.																					.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	.	.	.	.	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C
Template Known Secondary structure		S												S		G	G	G															B		G	G	G			.	.	.	.			S		S	B							T	T							S	S	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		295	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure					.	.																																		.	.	.	.	.	.																										.
Query SS confidence					.	.																																		.	.	.	.	.	.																										.
Query Sequence		S	A	L	.	.	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	.	.	.	.	.	.	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	.	I	A	V	R	T	G	H	H	C	A
Query Conservation					.	.																																		.	.	.	.	.	.																										.
Alig confidence					.	.																								.										.	.	.	.	.	.																										.
Template Conservation																														.
Template Sequence		N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	N	.	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S
Template Known Secondary structure			T	T	S																							T	T	.	T				S	S				T	T					S	S	S							T	T													T	T						S	T	T	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H
Query Conservation
Alig confidence			.	.	.	.	.	.					.								.
Template Conservation			.	.	.	.	.	.					.								.
Template Sequence		K	.	.	.	.	.	.	R	N	E	A	.	X	R	I	C	T	S	L	.	L	P	E	S	Q	F	P	D	L	E	K	R	L	Q	X	L	N
Template Known Secondary structure			.	.	.	.	.	.		T	T		.						S	S	.	S		G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.					.								.
Template SS confidence
		405							.	.	.	.		410	.	.	.	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.