Job Description P77444 Confidence 99.96% Date Thu Jan 5 12:29:21 GMT 2012 Rank 118 Aligned Residues 356 % Identity 15% Template c3fdbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																										.
Query SS confidence								.	.																										.
Query Sequence		F	S	V	D	K	V	.	.	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	.	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F
Query Conservation								.	.																										.
Alig confidence								.	.																										.																											.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		X	Q	F	P	S	I	E	D	L	R	A	R	N	T	X	K	W	T	R	Y	G	Q	G	V	L	P	L	W	V	A	E	S	D	F	S	T	C	P	A	V	L	Q	A	I	T	D	A	V	Q	R	E	A	F	G	Y	Q	P	D	G	S	.	.	.	.	.	.	.	L	L	S	Q	A	T	A	E	F	Y	A	D	R
Template Known Secondary structure													T							S	S		T	T	S					S	S				S																T	T			S	S			S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.
		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		I	N	A	R	.	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P
Query Conservation						.
Alig confidence						.																							.	.	.	.																									.	.	.	.											.	.
Template Conservation																													.	.	.	.																									.	.	.	.											.	.
Template Sequence		Y	G	Y	Q	A	R	P	E	W	I	F	P	I	P	D	V	V	R	G	L	Y	I	A	I	D	H	F	.	.	.	.	T	P	A	Q	S	K	V	I	V	P	T	P	A	Y	P	P	F	F	H	L	L	S	A	T	.	.	.	.	Q	R	E	G	I	F	I	D	A	T	.	.	G	G	I	N	L	H	D	V	E
Template Known Secondary structure								G	G	G					S														.	.	.	.	S		T	T								S			T										.	.	.	.	T									T	.	.	T	S
Template Predicted Secondary structure																													.	.	.	.																									.	.	.	.											.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																																		.	.	.	.	.	.	.
Query SS confidence																										.	.	.																																		.	.	.	.	.	.	.
Query Sequence		T	L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	A	L	.	.	.	.	.	.	.	D	C	D	F	Y	V	F	S	G	H	K	L	Y
Query Conservation																										.	.	.																																		.	.	.	.	.	.	.
Alig confidence																										.	.	.																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	F	Q	A	G	A	R	S	I	L	L	C	N	P	Y	N	P	L	G	X	V	F	A	P	E	W	L	N	E	L	C	D	L	A	H	R	Y	D	A	R	V	L	V	D	E	I	H	A	P	L	V	F	D	G	Q	H	T	V	A	A	G	V	S	D	T	A	A	S	V	C	I	T	I	T	A	P	S	A	W
Template Known Secondary structure						T	T								S	S	B	T	T	T	T	B																	T	T								T	T	G	G	G	B	S	S	S					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		229	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		G	P	T	G	.	.	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E
Query Conservation						.	.
Alig confidence						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	A	G	L	K	C	A	Q	I	I	F	S	N	P	S	D	A	E	H	W	Q	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	V	I	K	D	G	A	S	T	L	G	L	I	A	A	E	A	A	Y	R	Y	G	T	D	F	L	N	Q	E	V	A	Y	L	K
Template Known Secondary structure				G	G	G									S										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	.	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y
Query Conservation																													.
Alig confidence																													.																																		.	.	.	.	.	.												.	.
Template Conservation																																																															.	.	.	.	.	.												.	.
Template Sequence		N	N	H	D	F	L	L	H	E	I	P	K	R	I	P	G	A	K	I	T	P	X	Q	A	T	Y	L	X	W	I	D	F	R	D	T	T	I	E	G	S	P	S	E	F	F	I	E	K	A	K	V	A	X	N	D	G	A	W	F	G	E	.	.	.	.	.	.	D	G	T	G	F	C	R	L	N	F	A	.	.
Template Known Secondary structure															S	T	T							S	B		S							T	T	S				S																	G	G	G	G		G	.	.	.	.	.	.	G	G	T	T								.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.												.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.							.	.	.	.	.	350	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	R	E	V	L	E	E	A	I	D	R	X	A	K	A	V	S	H
Template Known Secondary structure		S																	T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions