Job Description P77444 Confidence 99.89% Date Thu Jan 5 12:29:21 GMT 2012 Rank 207 Aligned Residues 327 % Identity 14% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		70	.	.	.	.	.	.	.	.	.	80	.									.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure														.	.	.	.	.	.	.	.																									.
Query SS confidence														.	.	.	.	.	.	.	.																									.
Query Sequence		E	N	V	R	K	R	A	S	L	F	I	N	.	.	.	.	.	.	.	.	A	R	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	.	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E
Query Conservation														.	.	.	.	.	.	.	.																									.
Alig confidence														.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P	E	L	K	D	Y	E	L	V	E	V
Template Known Secondary structure																	T	T	T				G	G	G																							T	T	S	S		T	T							S	S							T	S	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																											.	.	.													.																					.	.	.
Query SS confidence																																											.	.	.													.																					.	.	.
Query Sequence		L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	.	.	.	P	L	A	E	M	I	T	L	A	H	Q	H	.	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	.	.	.
Query Conservation																																											.	.	.													.																					.	.	.
Alig confidence																																											.	.	.													.																					.	.	.
Template Conservation
Template Sequence		D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X	I	I	S	D	E	V	Y	G	A	F	V	P	N	F	K	S	I	Y	S	V
Template Known Secondary structure							T	T	T	T	S											S		T	T								S	S		T	T	T		B																		T	T								T	T	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.																.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	I	G	I	L	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		V	P	Y	N	T	X	L	V	Y	S	Y	S	L	.	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H	T
Template Known Secondary structure		S	G	G	G										.		S		G	G	G									S	S									T	S														T	T		S		G	G	G												T	T	T	T	T	G	G	G
Template Predicted Secondary structure															.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.								300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	.	.	.	.	.	.	.	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	A	P	K	D	E	T	D	T	N	T	H	Y	Y	S	L	I	D	I	Y	R	L	A	E	K	I	Y	G	K	E
Template Known Secondary structure			S																		T	T		B	G	G	G	T	B																							T						S	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
							339	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.														.
Query SS confidence		.	.	.	.	.														.
Query Sequence		.	.	.	.	.	L	G	K	H	H	A	Y	D	V	G	S	F	L	.	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R	L	L
Query Conservation		.	.	.	.	.														.
Alig confidence		.	.	.	.	.														.															.	.	.	.	.	.	.											.
Template Conservation																																			.	.	.	.	.	.	.											.
Template Sequence		F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	.	.	.	.	.	.	.	A	K	P	G	E	L	R	V	S	Q	.	A	N	L	P	T	E	D	Y	A	L	I	G	K	Q	V	L	E	L	L	K	E	Y
Template Known Secondary structure																							T	T	S	S	S		T	T					.	.	.	.	.	.	.	S	S	T	T						S	.	S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.											.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.								.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions