Job Description P77444 Confidence 99.95% Date Thu Jan 5 12:29:21 GMT 2012 Rank 154 Aligned Residues 349 % Identity 13% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		I	F	S	V	D	K	V	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	.	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I
Query Conservation																																.
Alig confidence												.	.	.																		.																													.	.	.	.	.	.
Template Conservation												.	.	.																																															.	.	.	.	.	.
Template Sequence		P	Y	P	F	E	R	L	R	A	L	.	.	.	L	K	E	I	T	P	K	K	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	.	.	.	.	.	.	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F
Template Known Secondary structure												.	.	.		T	T				S	S				B					S			S												T	T	G	G	G	G	G	S				T	T			.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.																																															.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		N	A	R	.	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T
Query Conservation					.
Alig confidence					.																							.	.																											.	.	.	.																			.
Template Conservation																												.	.																											.	.	.	.																			.
Template Sequence		K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	.	.	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	.	.	.	.	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	.	L	N	E
Template Known Secondary structure		S					G	G	G					S	S	S												.	.	T	T	T		S	S								S			T									T	.	.	.	.	T										G	G	G	T	T				.
Template Predicted Secondary structure																												.	.																											.	.	.	.																			.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.													.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	C	D	F	Y	V	F	S	G
Query Conservation																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	L	Q	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L
Template Known Secondary structure								S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		H	K	L	Y	G	P	T	G	.	.	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I
Query Conservation										.	.
Alig confidence										.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F
Template Known Secondary structure						T		G	G	G																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																									.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L
Query Conservation
Alig confidence																					.	.	.	.	.	.															.																											.	.	.	.
Template Conservation																					.	.	.	.	.	.															.																											.	.	.	.
Template Sequence		R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	.	.	.	.	.	.	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	.	.	.	.	I	G	A	D	Y	V	R	L	A	L
Template Known Secondary structure																S	T	T			.	.	.	.	.	.			S	B	S	S							S		.															B				G	G	G	G		S	T	T	.	.	.	.	T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.															.																											.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	Y	N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		V	.	.	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E
Template Known Secondary structure			.	.	S
Template Predicted Secondary structure			.	.
Template SS confidence
		354			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions