Job Description P77444 Confidence 99.97% Date Thu Jan 5 12:29:21 GMT 2012 Rank 100 Aligned Residues 357 % Identity 13% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		3	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure							.																											.	.	.	.
Query SS confidence							.																											.	.	.	.
Query Sequence		F	S	V	D	K	.	V	R	A	D	F	P	V	L	S	R	E	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	.	.	.	.	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S
Query Conservation							.																											.	.	.	.
Alig confidence							.																					.	.	.				.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																												.	.	.																																.	.	.	.	.	.	.
Template Sequence		Y	D	F	T	H	V	P	K	R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	.	.	.	W	I	A	E	X	D	F	K	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	.	.	.	.	.	.	.	P	A	E	Y	Y	K	A	V	A	D	W	E	E
Template Known Secondary structure		S			S	S						T	T		T	T	T	T	T			T	T					.	.	.		S	S			S	S															T	T									.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.	70	.	.	.	.	.
		78	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.
Predicted Secondary structure								.																																																																					.	.	.
Query SS confidence								.																																																																					.	.	.
Query Sequence		L	F	I	N	A	R	.	S	A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	.	.	.	L	Q
Query Conservation								.																																																																					.	.	.
Alig confidence								.																							.	.	.	.																									.	.	.	.															.	.	.
Template Conservation																															.	.	.	.																									.	.	.	.
Template Sequence		I	E	H	R	A	R	P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	.	.	.	.	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	.	.	.	.	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	N
Template Known Secondary structure					S					G	G	G					S														.	.	.	.	S		T	T							S	S			T								T	T	.	.	.	.	T												T	T
Template Predicted Secondary structure																															.	.	.	.																									.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.
Predicted Secondary structure												.																				.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence												.																				.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		L	E	T	L	P	T	L	F	D	E	.	K	T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	Q	A	.	.	.	.	.	.	.	.	L	D	C	D	F	Y	V
Query Conservation												.																				.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence												.																				.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	D	L	E	E	K	L	A	T	P	S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S
Template Known Secondary structure										T	S	T	T								S	S	B	T	T	T	T	B																	T	T								T	T	G	G	G	B		S	S						G	G	G	S		T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	I	L	Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L
Query Conservation													.	.
Alig confidence													.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R
Template Known Secondary structure									S		G	G	G									S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T		S	S			T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																							.																.
Query SS confidence																																							.																.
Query Sequence		N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	.	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	.	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M
Query Conservation																																							.																.
Alig confidence																																							.																.																.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	.	.	.	.	.	.	N	G	H	E	F
Template Known Secondary structure																							T	T	S						S	B	S	S							G	G	G		S																				G	G	G	G		T	.	.	.	.	.	.	T	G	G	G
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H	R	L	L
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		V	R	I	N	L	A	.	.	C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N	L
Template Known Secondary structure								.	.	S																		T
Template Predicted Secondary structure								.	.
Template SS confidence
		363	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions