Job Description P77444 Confidence 99.94% Date Thu Jan 5 12:29:21 GMT 2012 Rank 162 Aligned Residues 343 % Identity 15% Template c2z61A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.
Predicted Secondary structure													.																	.																																																		.
Query SS confidence													.																	.																																																		.
Query Sequence		V	R	A	D	F	P	V	L	S	R	E	.	V	N	G	L	P	L	A	Y	L	D	S	A	A	S	A	Q	.	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	.	S
Query Conservation													.																	.																																																		.
Alig confidence													.																	.																.	.	.	.	.																														.
Template Conservation																																														.	.	.	.	.
Template Sequence		V	M	D	I	L	A	L	A	Q	K	L	E	S	E	G	K	K	V	I	H	L	E	I	G	E	P	D	F	N	T	P	K	P	I	V	D	E	G	I	K	S	L	K	E	.	.	.	.	.	G	K	T	H	Y	T	D	S	R	G	I	L	E	L	R	E	K	I	S	E	L	Y	K	D	K	Y	K	A	D	I	I
Template Known Secondary structure		T													T	T										S		S	S																T	.	.	.	.	.	T			S				T	T																	S	S
Template Predicted Secondary structure																																														.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	L	V	F	V	R	G	T	T	E	G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	K
Query Conservation
Alig confidence																							.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template Conservation																							.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template Sequence		P	D	N	I	I	I	T	G	G	S	S	L	G	L	F	F	A	L	S	S	I	.	.	.	.	I	D	D	G	D	E	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	F	I	R	F	L	.	.	.	.	G	A	K	P	V	F	C	D	.	.	.	.	.	.	F	T	V	E	S	L	E	E	A	L	S	D	K
Template Known Secondary structure		G	G	G					S	S													.	.	.	.			T	T							S	S			T									T	.	.	.	.	T								.	.	.	.	.	.	S	S										S	S
Template Predicted Secondary structure																							.	.	.	.																									.	.	.	.									.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.																							.
Query SS confidence																																													.	.	.	.	.	.	.																							.
Query Sequence		T	R	L	L	A	I	T	H	V	S	N	V	L	G	T	E	N	P	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	.	.	.	.	.	.	.	H	P	V	D	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	.	P	T	G	I	G	I	L
Query Conservation																																													.	.	.	.	.	.	.																							.
Alig confidence																				.																									.	.	.	.	.	.	.																							.
Template Conservation																				.
Template Sequence		T	K	A	I	I	I	N	S	P	S	N	P	L	G	E	V	I	D	.	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G	L	V	Y	E	G	K	C	Y	S	A	I	E	F	D	E	N	L	E	K	T	I	L	I	N	G	F	S	L	Y	A	M	T	G	W	R	I	G	Y	V
Template Known Secondary structure									S	S		T	T	T						.												S							T	T	T	T		B	S	S	S					G	G	G	T		T	T		S	S													G	G	G
Template Predicted Secondary structure																				.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	N	D	E	I	I	E	A	I	L	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	N	L	F	I	S	A	P	T	I	S	Q	Y	A	A	L	K	A	F	E	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D	R	R	R	R	L	V	L	K	Y
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S	S	S									G	G	G	G	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.																							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	V	P	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V	T
Query Conservation
Alig confidence						.										.																																				.	.	.	.	.	.												.	.
Template Conservation						.										.																																				.	.	.	.	.	.												.	.
Template Sequence		V	K	D	F	.	G	W	E	V	N	N	P	I	G	.	A	Y	Y	V	F	P	N	I	G	E	D	G	R	E	F	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	G	S	.	.	.	.	.	.	K	G	K	N	Y	I	R	I	S	Y	A	.	.	N	S	Y	E	N	I	K	E	G	L	E
Template Known Secondary structure					T	.	T		B						B	.	T	T					B		S	S																				G	G	G	G		G	.	.	.	.	.	.	G	G	S	S	B							.	.	S
Template Predicted Secondary structure						.										.																																				.	.	.	.	.	.												.	.
Template SS confidence
		293	.	.	.		.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340							.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.
		397	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Q	R	I	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	K	E	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions