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Job DescriptionP77444
Confidence99.96%DateThu Jan 5 12:29:21 GMT 2012
Rank123Aligned Residues318
% Identity10%Templatec2gqnB_
PDB info PDB header:lyaseChain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHH
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Template Sequence  EAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGC. . . VLFPCGAAAVANSILAF. . . . IEQGDHVLMTNTAYE
Template Known Secondary structure  TTTTTS

BGGG

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   40.........50.........60.........70.........80 .........90....... ..100.........110..
 
   125....130.........140.........150.........160.........170.........180.........190.. .......200..
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Query Sequence  ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQ. . HGAKVLVDGA
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Template Sequence  PSQDFCSKILSKLGVTTSWFDPL. . . . . IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNT
Template Known Secondary structure  TGGGGT

TT.....
GGGGGGG

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TTT





TT

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   113......120.........130..... ....140.........150.........160.........170.........180.......
 
   203......210.........220.........230... ......240.........250.........260.........270.........
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Query Sequence  QAVMHHPVDVQALDCDFYVFSGHKLYGPTGI. . . GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTP
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Template Sequence  WAAGVLF. KALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAY. . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTTSS.
GGGGT
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   188.190.... .....200.........210.........220.........230.........240.........250
 
   280.........290.........300.........310.........320...... ...330.........340...
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Query Sequence  NTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY. . . . . . . . . . . . . . . . GPQNRLGVIAFNLGKHH
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Template Sequence  . . . . . . . . . . . ITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL
Template Known Secondary structure  ...........TT
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   251........260.........270.........280.........290.........300.........310.........
 
   344.....350.... .....360.........370... ......380.........390.........400..
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Query Sequence  AYDVGSFLDNY. . . . GIAVRTGHHCAMPLMAYYN. . . . . . . . . . . . . VPAMCRASLAMYNTHEEVDRLVTGLQRIH
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Template Sequence  NNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV
Template Known Secondary structure 
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   320.........330.........340.........350.........360.........370.........380.........390.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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