Job Description P77444 Confidence 99.97% Date Thu Jan 5 12:29:21 GMT 2012 Rank 111 Aligned Residues 338 % Identity 17% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																	.																																																		.	.
Query SS confidence																	.																																																		.	.
Query Sequence		N	G	L	P	L	A	Y	L	D	S	A	A	S	A	Q	.	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	N	A	R	.	.	S	A	E	E	L	V	F	V	R	G	T	T	E
Query Conservation																	.																																																		.	.
Alig confidence																	.																.	.	.	.																															.	.
Template Conservation																																	.	.	.	.
Template Sequence		R	G	V	G	L	I	D	L	S	I	G	S	T	D	L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	.	.	.	.	P	T	T	Y	G	Y	C	L	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y	E	G	R	Y	G	V	G	L	D	P	R	R	E	A	L	A	L	I	G	S	Q	E
Template Known Secondary structure		T	T							S	S																			T	T		.	.	.	.	G	G	G	S	S																							S					T	T	T	S					S	S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	K	T	R	L	L	A	I	T	H	V	S	N	V
Query Conservation
Alig confidence											.	.	.	.																									.	.	.	.
Template Conservation											.	.	.	.																									.	.	.	.
Template Sequence		G	L	A	H	L	L	L	A	L	.	.	.	.	T	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	.	.	.	.	S	L	R	T	F	L	I	P	L	R	E	D	G	L	A	D	L	K	A	V	P	E	G	V	W	R	E	A	K	V	L	L	L	N	Y	P	N	N	P
Template Known Secondary structure											.	.	.	.			T	T							S	S												T	.	.	.	.	T								B		T	T	S	S	B		G	G	G	S															S	S		T	T
Template Predicted Secondary structure											.	.	.	.																									.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		177	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure				.	.	.																																		.	.	.	.	.	.	.																							.	.
Query SS confidence				.	.	.																																		.	.	.	.	.	.	.																							.	.
Query Sequence		L	G	.	.	.	T	E	N	P	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	.	.	.	.	.	.	.	V	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	P	T	G	I	.	.	G	I	L	Y	V	K	E	A	L	L	Q
Query Conservation				.	.	.																																		.	.	.	.	.	.	.																							.	.
Alig confidence				.	.	.																																		.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	N	L	A	G	F	R	L	G	F	A	L	G	S	E	E	A	L	A
Template Known Secondary structure		T																			T	T								T	T	G	G	G	B	S	S	S					G	G	G	S	T	T	G	G	G	T												T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A	L	S	Q	L	E	S	V	P	D	L	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Sequence		R	L	E	R	V	K	G	V	I	D	F	N	Q	Y	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	M	G	V	E	A	L	K	T	P	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A	E	A	L	K	G	.	.	V	L	S
Template Known Secondary structure														S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	S																								T	T	.	.	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E	V	D	R	L	V	T	G	L	Q	R	I	H
Query Conservation
Alig confidence																																												.	.	.	.	.	.												.	.
Template Conservation																																												.	.	.	.	.	.												.	.
Template Sequence		L	L	P	P	R	A	T	M	Y	L	W	G	R	L	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	A	P	G	R	G	F	G	P	.	.	.	.	.	.	G	G	K	G	F	V	R	I	A	L	V	.	.	R	P	L	E	E	L	L	E	A	A	K	R	I	R	E	A	L
Template Known Secondary structure							B	S	S								T	T													T	T						G	G	G	G		G	.	.	.	.	.	.	G	G	T	T								.	.	S															T
Template Predicted Secondary structure																																												.	.	.	.	.	.												.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.							.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions