Job Description P0AAB6 Confidence 99.93% Date Thu Jan 5 11:12:27 GMT 2012 Rank 41 Aligned Residues 212 % Identity 15% Template d1vpaa_ SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Cytidylytransferase Resolution 2.67

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																							.	.
Query SS confidence						.																																																							.	.
Query Sequence		N	L	K	A	.	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	K	.	.	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q
Query Conservation						.																																																							.	.
Alig confidence						.												.	.	.																																									.	.											.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Sequence		H	M	N	V	A	I	L	L	A	A	G	K	G	E	R	M	.	.	.	S	E	N	V	P	K	Q	F	L	E	I	E	G	R	M	L	F	E	Y	P	L	S	T	F	L	K	S	E	A	I	D	G	V	V	I	V	T	R	R	E	W	F	E	V	V	E	K	R	V	F	H	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															G	G	G	.	.	.			S	S		G	G	G				T	T			T	T											T	T		S								G	G	G						T	T				T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	K	R	Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	G	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	G	I	V	E	G	G	D	T	R	S	Q	S	V	R	S	A	L	E	F	L	E	K	F	S	P	S	Y	V	L	V	H	D	S	A	R	.	.	.	.	.	.	P	F	L	R	K	K	H	V	S	E	V	L	R	R	A	R	E	T	G	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T									S	S													G	G	G			S							T	T	S	.	.	.	.	.	.																			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
																		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	L	A	K	R	M	P	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	D	Q	P	Q	T	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L	E	R	T	Q	P	G	A	W	G	R	I	Q	L	T
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Sequence		A	T	L	A	L	K	N	S	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	V	E	N	D	R	I	E	Y	I	P	R	K	G	V	Y	R	I	L	T	P	Q	A	F	S	Y	E	I	L	K	K	A	H	E	.	.	.	.	.	.	N	G	G	E	W	A
Template Known Secondary structure										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T								T	T																				T	.	.	.	.	.	.	T					S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.																							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	A	I	A	E	L	A	K	K	Q	.	S	V	D	A	M	L	M	T	G	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F	V	K	Y
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		D	D	T	E	P	V	Q	K	L	G	V	K	I	A	L	V	E	G	D	P	L	C	F	K	V	T	F	K	E	D	L	E	L	A	R	I	I	A
Template Known Secondary structure		S	S						T	T	T										G	G	G					S	T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions