Job Description P0AAB6 Confidence 99.95% Date Thu Jan 5 11:12:27 GMT 2012 Rank 35 Aligned Residues 218 % Identity 15% Template c3tqdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		K	A	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	.	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	K	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q	R	V	K	R
Query Conservation																							.
Alig confidence								.	.	.	.	.				.	.	.	.	.			.																																		.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.				.	.	.	.	.																																					.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	I	I	P	A	.	.	.	.	.	R	F	D	.	.	.	.	.	L	P	G	K	A	L	V	D	I	A	G	K	P	X	I	Q	H	V	Y	E	S	A	I	K	S	G	A	E	E	V	V	I	A	T	D	D	.	.	K	R	I	R	Q	V	A	E	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.	.	.	.				.	.	.	.	.		T	T	G	G	G				T	T														T	T		S							S		.	.										T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.				.	.	.	.	.																																					.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.						10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	.	.	G	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G	R	S	Q
Query Conservation																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																											.	.																		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	A	V	V	C	X	T	S	S	D	H	Q	S	G	T	E	R	I	A	E	A	A	V	A	L	G	F	E	D	D	E	I	I	V	C	L	Q	G	D	E	P	L	I	P	P	.	.	.	.	.	.	D	A	I	R	K	L	A	E	D	L	D	E	H	D	K	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T								T	T			S												T	T			T	T								T	T							.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template SS confidence
														62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		162	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.												.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	A	K	R	M	P	.	.	.	.	.	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	D	Q	P	Q	T	.	.	.	.	.	.	.	.	.	.	.	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L
Query Conservation									.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.															.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		S	L	C	T	P	I	T	E	V	D	E	L	F	N	P	H	S	T	K	V	V	L	N	R	R	N	.	.	.	.	.	.	.	.	Y	A	L	Y	F	S	H	A	P	I	P	W	G	R	D	T	F	S	D	K	E	N	L	Q	L	N	G	S	H	Y	R	H	V	G	I	Y	A	Y	R	V	G	F	L	E	E	Y
Template Known Secondary structure														T		T	T	S							T	T	S	.	.	.	.	.	.	.	.	B						S	S		S	S			T	T	T	T	T		G	G	G				S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.									.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	R	T	Q	P	G	A	W	G	R	I	Q	L	T	D	A	I	A	E	L	A	K	K	Q	S	V	D	A	M	L	M	T	G	.	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		L	S	W	D	A	C	P	A	E	K	X	E	A	L	E	Q	L	R	I	L	W	H	G	G	R	I	H	X	V	V	A	K	S	K	C	P	P	G	V	D	T	E	E	D	L	E	R	V	R
Template Known Secondary structure				S										T		T	T						T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions