Job Description P0AAB6 Confidence 99.56% Date Thu Jan 5 11:12:27 GMT 2012 Rank 60 Aligned Residues 186 % Identity 15% Template c3okrC_ PDB info PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		A	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	.	.	K	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q	R	V	K	R
Query Conservation																																																								.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	A	F	Y	Q	L	D	G	Q	T	L	I	E	R	A	V	D	G	L	L	D	S	G	V	V	D	T	V	V	V	A	V	P	A	D	R	T	D	E	A	R	Q	I	L	G	H	R	A	M	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T				T	T														T	S											S	S	S								S		S	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.															.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	G	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G	R	S	Q	V	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	G	V	N	L	A	L	T	V	L	S	E	P	E	F	V	L	V	H	D	A	A	R	.	.	.	.	.	.	A	L	T	P	P	A	L	V	A	R	V	V	E	A	L	R	D	G	Y	A	A	V	V	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S					S							T	T		.	.	.	.	.	.	T	T														T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
																												77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	M	P	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	D	Q	P	Q	T	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L	E	R	T	Q	P	G	A	W	G	R	I	Q	L	T	D	A	I	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	P	L	S	D	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	A	V	D	A	N	G	V	V	L	G	T	P	E	R	A	G	L	R	.	.	.	.	.	.	.	A	V	Q	T	P	Q	G	F	T	T	D	L	L	L	R	S	.	.	.	.	.	.	.	.	.	.	Y	Q	Y	T	D	D	A	S
Template Known Secondary structure						S	S	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S								S	S				.	.	.	.	.	.	.				S													.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140													.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.	.	.
		244	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	L	A	K	K	Q	.	S	V	D	A	M	L	M	T	G	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F	V	K	Y
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		L	V	E	H	I	G	G	Q	V	Q	V	V	D	G	D	P	L	A	F	K	I	T	T	K	L	D	L	L	L	A	Q	A	I	V
Template Known Secondary structure							T										G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions