Job Description P0AAB6 Confidence 99.97% Date Thu Jan 5 11:12:27 GMT 2012 Rank 33 Aligned Residues 237 % Identity 15% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	N	L	K	A	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	K	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q	R
Query Conservation
Alig confidence				.																	.	.	.	.	.	.																																		.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation				.																	.	.	.	.	.	.																																		.	.											.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	.	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	.	.	.	.	.	.	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	.	.	E	R	V	E	Q	A	V	Q	A	F	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.									S			S	S	S	T	T	.	.	.	.	.	.	G	G	G				T	T														T	T		S							S		.	.										T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																	.	.	.	.	.	.																																		.	.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		V	K	R	Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	.	.	G	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G
Query Conservation																																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	V	V	C	M	T	S	P	N	H	Q	S	G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	.	.	.	.	.	.	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	S			S											T	T			T	T								T	T		.	.	.	.	.	.	T	T															T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template SS confidence
																	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.											200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	Q	V	L	A	K	R	M	P	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	.	.	.	.	.	.	.	.	.	.	D	Q	P	Q	T	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L	E	R	T
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.
Template Sequence		A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	.	.	P	N	A	V	K	V	I	T	D	K	S	G	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	W
Template Known Secondary structure			S															T		.	.	T	T	S							T	T	S	B						S	S		S	S							T	S	S	S					S																						S
Template Predicted Secondary structure																				.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		Q	P	G	A	W	G	R	I	Q	L	T	D	A	I	A	E	L	A	K	K	Q	S	V	D	A	M	L	M	.	T	G	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F	V	K	Y	G	L	R
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	A	G	V	D	T	P	E	D	L	E	V	V	R	R	I	V	A	E	R
Template Known Secondary structure											T		T	T						T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions