Job Description P0AAB6 Confidence 99.88% Date Thu Jan 5 11:12:27 GMT 2012 Rank 48 Aligned Residues 222 % Identity 14% Template c3f1cB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		L	K	A	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	K	.	.	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q	R	V
Query Conservation																																																											.	.
Alig confidence															.	.	.	.	.	.																																							.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	Y	A	Q	I	L	A	G	M	G	N	V	.	.	.	.	.	.	S	M	P	K	Q	F	L	P	L	N	G	K	P	I	I	V	H	T	V	E	K	F	I	L	N	T	R	F	D	K	I	L	I	S	S	P	K	E	W	M	N	H	A	E	D	N	I	K	K	Y	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	T	.	.	.	.	.	.	S			G	G	G	S			T	T													T		T	T		S								G	G	G													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.							.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		K	R	Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	.	.	.	G	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G
Query Conservation																																										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	D	D	R	I	V	V	I	E	G	G	E	D	R	N	E	T	I	M	N	G	I	R	F	V	E	K	T	Y	G	L	T	D	D	D	I	I	V	T	H	D	A	V	R	.	.	.	.	.	.	P	F	L	T	H	R	I	I	E	E	N	I	D	A	A	L	E	T	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			T	T								S	S																T				T	T								T	T		.	.	.	.	.	.	T	T																T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template SS confidence
													70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	V	L	A	K	R	M	P	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	D	Q	P	Q	T	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L	E	R	T	Q	P	G	A	W	G	R	I	Q	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																					.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																					.	.
Template Sequence		A	V	D	T	V	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	T	I	V	E	S	S	N	H	E	V	I	T	D	I	P	V	R	D	H	M	Y	Q	.	.	.	.	.	.	G	Q	T	P	Q	S	F	N	M	K	K	V	F	N	H	Y	Q	N	L	T	.	.	P	E	K	K	Q	I	L
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				B		S	S	S	S	S			B				G	G	G				.	.	.	.	.	.																		T	S		.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																					.	.
Template SS confidence
		133	.	.	.	.	.	.	140														.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.
		239	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		T	D	A	I	A	E	L	A	K	K	Q	.	S	V	D	A	M	L	M	T	G	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F	V	K	Y	G	L	R
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		T	D	A	C	K	I	C	L	L	A	G	D	D	V	K	L	V	K	G	E	I	F	N	I	K	I	T	T	P	Y	D	L	K	V	A	N	A	I	I	Q	E	R
Template Known Secondary structure												T										T	T						S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions