Job Description P0AAB6 Confidence 99.95% Date Thu Jan 5 11:12:27 GMT 2012 Rank 34 Aligned Residues 214 % Identity 17% Template c2xwlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg Resolution 1.49 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		A	V	I	P	V	A	G	L	G	M	H	M	L	P	A	T	K	A	I	P	K	E	M	L	P	I	V	D	K	P	M	I	Q	Y	I	V	D	E	I	V	A	A	G	I	K	E	I	L	L	V	T	H	A	S	K	.	.	N	A	V	E	N	H	F	D	T	S	Y	E	L	E	S	L	L	E	Q	R	V	K	R
Query Conservation																																																									.	.
Alig confidence															.	.	.																																								.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	V	P	A	A	G	S	G	E	R	L	R	.	.	.	A	G	R	P	K	A	F	V	T	L	G	G	T	P	L	L	E	H	A	L	S	G	L	R	A	S	G	V	I	D	R	I	V	I	A	V	P	P	A	L	T	D	E	S	K	L	V	F	G	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	T	T	.	.	.	S	S	S		G	G	G	S			T	T														T	S											G	G	G										B	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	L	L	A	E	V	Q	S	I	C	P	P	G	V	T	I	M	N	V	R	Q	G	E	P	L	G	L	G	H	S	I	L	C	A	R	P	A	I	G	.	D	N	P	F	V	V	V	L	P	D	V	V	I	D	D	A	S	A	D	P	L	R	Y	N	L	A	A	M	I	A	R	F	N	E	T	G	R	S	Q	V
Query Conservation																																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.												.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	V	I	V	S	G	G	V	D	R	T	E	S	V	A	L	A	L	E	A	A	G	D	A	E	F	V	L	V	H	D	A	A	R	.	.	.	.	.	.	A	L	T	P	P	A	L	I	A	R	V	V	A	A	L	K	E	G	H	S	A	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S										T	T	S		S		S							T	T		.	.	.	.	.	.	T	T																T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template SS confidence
																		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	R	M	P	G	D	L	S	E	Y	S	V	I	Q	T	K	E	P	L	D	R	E	G	K	V	S	R	I	V	E	F	I	E	K	P	D	Q	P	Q	T	L	D	S	D	I	M	A	V	G	R	Y	V	L	S	A	D	I	W	P	E	L	E	R	T	Q	P	G	A	W	G	R	I	Q	L	T	D	A	I
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																					.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		P	G	L	A	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	A	V	D	A	N	G	A	V	L	G	T	P	E	R	A	G	L	R	.	.	.	.	.	.	.	A	V	Q	T	P	Q	G	F	H	A	D	V	L	R	R	A	Y	A	R	A	.	.	.	.	T	A	G	G	V	T	D	D	A
Template Known Secondary structure							S	S	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S								G	G	G			.	.	.	.	.	.	.				S														T	T		.	.	.	.		S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.
		243	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	E	L	A	K	K	Q	.	S	V	D	A	M	L	M	T	G	D	S	Y	D	C	G	K	K	M	G	Y	M	Q	A	F	V	K	Y	G	L	R	N
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		S	L	V	E	Q	L	G	T	P	V	Q	I	V	D	G	D	P	L	A	F	K	I	T	T	P	L	D	L	V	L	A	E	A	V	L	A	H	H	H
Template Known Secondary structure						T	T	T										G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions