Job Description P0AED7 Confidence 100.00% Date Thu Jan 5 11:23:04 GMT 2012 Rank 13 Aligned Residues 354 % Identity 23% Template c3tx8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution Resolution 2.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		M	S	C	P	V	I	E	L	T	Q	Q	L	I	R	R	P	S	L	S	P	D	D	A	G	C	Q	A	L	L	I	E	R	L	Q	A	I	G	F	T	.	V	E	R	M	D	F	A	D	T	Q	N	F	W	A	W	R	G	Q	G	E	T	L	A	F	A	G	H	T	D	V	V	P	P	G	D	A	D	R	W	I
Query Conservation																																									.
Alig confidence																																									.																																		.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	L	G	D	P	I	V	L	T	Q	R	L	V	D	I	P	S	P	S	G	Q	E	K	Q	I	A	D	E	I	E	D	A	L	R	N	L	N	L	P	G	V	E	V	F	R	F	N	N	N	V	L	A	R	T	N	R	G	L	A	S	R	V	X	L	A	G	H	I	D	T	V	P	I	.	.	.	.	.	.	.
Template Known Secondary structure				S											S	S			B	T	T		T													T	T	T		T	T							T	T											S											B	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	P	F	E	P	T	I	R	D	G	M	L	F	G	R	G	A	A	D	M	K	G	S	L	A	A	M	V	V	A	A	E	R	F	V	A	Q	H	P	N	H	T	G	R	L	A	F	L	I	T	S	D	E	E	A	S	A	H	N	G	T	V	K	V	V	E	A	L	M	A	R	N	E	R	L	D	Y	C	L
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		A	D	N	L	P	S	R	V	E	D	G	I	X	Y	G	C	G	T	V	D	X	K	S	G	L	A	V	Y	L	H	T	F	A	T	L	A	T	S	T	E	L	K	H	.	D	L	T	L	I	A	Y	E	C	E	E	V	A	D	H	L	N	G	L	G	H	I	R	D	E	H	P	E	W	L	A	A	D	L	A	L
Template Known Secondary structure			S			S					S	S				S	S	S	T	T	T	T															T	S		T	T			S	.											S	S		T	T	S											G	G	G	G			S
Template Predicted Secondary structure																																													.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		V	G	E	P	S	S	I	E	V	V	G	D	V	V	K	N	G	R	R	G	S	L	T	C	N	L	T	I	H	G	V	Q	G	H	V	A	Y	P	H	L	A	D	N	P	V	H	R	A	A	P	F	L	N	E	L	V	A	I	E	W	D	Q	.	.	G	N	E	F	F	P	A	T	S	M	Q	I	A	N	I	Q
Query Conservation																																																																.	.
Alig confidence									.	.	.	.	.																																																			.	.
Template Conservation									.	.	.	.	.
Template Sequence		L	G	E	P	T	G	G	.	.	.	.	.	W	I	E	A	G	C	Q	G	N	L	R	I	K	V	T	A	H	G	V	R	A	H	S	A	R	S	W	L	G	D	N	A	X	H	K	L	S	P	I	I	S	K	V	A	A	Y	K	A	A	E	V	N	I	D	G	L	T	Y	R	E	G	L	N	I	V	F	C	E
Template Known Secondary structure							T	T	.	.	.	.	.					S	B													B			B	T	T	S	G	G	G	S	B		T	G	G	G	G																		T	T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	G	T	G	S	N	N	V	I	P	G	E	L	F	V	Q	F	N	F	R	F	S	T	E	L	T	D	E	M	I	K	A	Q	V	L	A	L	L	E	K	H	.	Q	L	R	Y	T	V	D	W	W	L	S	G	Q	P	F	L	T	A	R	G	K	L	V	D	A	V	V	N	A	V	E	H	Y	N	E	I	K	P
Query Conservation																																											.
Alig confidence					.																																						.														.	.	.																		.
Template Conservation					.																																																				.	.	.																		.
Template Sequence		S	G	V	.	A	N	N	V	I	P	D	L	A	W	X	N	L	N	F	R	F	A	P	N	R	D	L	N	E	A	I	E	H	V	V	E	T	L	E	L	D	G	Q	D	G	I	E	W	A	V	E	D	G	A	G	.	.	.	G	A	L	P	G	L	G	Q	Q	V	T	S	G	L	I	D	A	.	V	G	R	E
Template Known Secondary structure				S	.	B	T	T	B			S												T	T	S													T	T	T	T	T	S	T	T											.	.	.		B				T	T	S										.			G	G
Template Predicted Secondary structure					.																																																				.	.	.																		.
Template SS confidence
		238	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Q	L	L	T	T	G	G	T	S	D	G	R	F	I	A	R	M	G	A	Q	V	V	E	L	G	P	.	V	N	A	T	I	H	K	I	N	E	C	V	N	A	A	D	L	Q	L	L	A	R	M	Y	Q	R	I	M	E	Q
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		K	I	R	A	K	F	G	W	T	D	V	S	R	F	S	A	X	G	I	P	A	L	N	F	G	A	G	D	P	S	F	A	H	K	R	D	E	Q	C	P	V	E	Q	I	T	D	V	A	A	I	L	K	Q	Y	L	S	E
Template Known Secondary structure		G						S			T						T	T	T								S	S		S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions