Job Description P0AED7 Confidence 100.00% Date Thu Jan 5 11:23:04 GMT 2012 Rank 3 Aligned Residues 361 % Identity 20% Template c3pfoB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																							.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	P	V	I	E	L	T	Q	Q	L	I	R	R	P	S	L	S	P	D	D	A	G	C	Q	A	L	L	I	E	R	L	Q	A	I	G	F	T	V	E	R	M	D	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	Q	N	F	W	A	W	R	G	Q	G	E	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	D	Q	V	A	F	L	Q	R	X	V	Q	F	R	S	V	R	G	E	E	A	P	Q	Q	E	W	L	A	Q	Q	F	A	D	R	G	Y	K	V	D	T	F	S	L	A	D	V	D	I	A	S	H	P	K	A	A	P	X	D	T	I	D	P	A	G	S	X	Q	V	V	A	T	A	D	S	D	G	K	G	R	S
Template Known Secondary structure													T	S				T	T																T	T								T	T	T	T	T	G	G	G	S	T	T					T	T			G	G	G													S	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	A	G	H	T	D	V	V	P	P	G	D	A	D	R	W	I	N	P	P	F	E	P	T	I	R	D	G	M	L	F	G	R	G	A	A	D	M	K	G	S	L	A	A	M	V	V	A	A	E	R	F	V	A	Q	H	P	N	H	T	G	R	L	A	F	L	I	T	S	D	E	E	A	S	A	H	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	Q	G	H	I	D	V	V	P	E	G	P	V	D	L	W	S	D	P	P	Y	E	A	K	V	R	D	G	W	X	I	G	R	G	A	Q	D	X	K	G	G	V	S	A	X	I	F	A	L	D	A	I	R	T	A	G	Y	A	P	D	A	R	V	H	V	Q	T	V	T	E	E	E	S	T	G	N	G	A
Template Known Secondary structure																G	G	G		S	S		T	T	T					T	T					T	T	T	T	T	T																	T	T				S	S								S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	K	V	V	E	A	L	M	A	R	N	E	R	L	D	Y	C	L	V	G	E	P	S	S	I	E	V	V	G	D	V	V	K	N	G	R	R	G	S	L	T	C	N	L	T	I	H	G	V	Q	G	H	V	A	Y	P	H	L	A	D	N	P	V	H	R	A	A	P	F	L	N	E	L	V	A	I	E	W	D
Query Conservation
Alig confidence									.	.	.	.	.																.	.	.	.	.
Template Conservation									.	.	.	.	.																.	.	.	.	.
Template Sequence		L	S	T	L	X	R	G	.	.	.	.	.	Y	R	A	D	A	C	L	I	P	E	P	T	G	H	T	.	.	.	.	.	L	T	R	A	Q	V	G	A	V	W	F	R	L	R	V	R	G	T	P	V	H	V	A	Y	S	E	T	G	T	S	A	I	L	S	A	X	H	L	I	R	A	F	E	E	Y	T	K	E
Template Known Secondary structure								T	.	.	.	.	.				S									S	S		.	.	.	.	.																					B	G	G	G	G	G	G	S
Template Predicted Secondary structure									.	.	.	.	.																.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		221										.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	G	N	E	F	F	P	A	T	S	M	Q	I	A	N	I	Q	A	G	T	G	S	N	N	V	I	P	G	E	L	F	V	Q	F	N	F	R	F	S	T	E	L	T	D	E	M	I	K	A	Q	V	L	A	L	L	E	K	.	.	.	.	.	.	.	.	.	.	H	Q	L	R
Query Conservation			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																				.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		L	N	A	Q	A	V	R	D	P	W	F	G	Q	V	K	N	P	I	K	F	N	V	G	I	I	K	G	G	D	.	W	A	S	S	T	A	A	W	C	E	L	D	C	R	L	G	L	L	T	G	D	T	P	Q	E	A	X	R	G	I	E	K	C	L	A	D	A	Q	A	T	D	S	F	L	S	E	N	P	A	E
Template Known Secondary structure						G	G	G	S	T	T	T	T	T	S	S	S													S	.		T	T	B															T	T																			T	T							S
Template Predicted Secondary structure																															.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		Y	T	V	D	W	W	L	S	G	Q	P	F	L	T	A	R	G	K	L	V	D	A	V	V	N	A	V	E	H	Y	N	E	I	K	P	Q	L	L	T	T	G	G	T	S	D	G	R	F	I	A	R	.	M	G	A	Q	V	V	E	L	G	P	V	N	A	T	I	H	K	I	N	E	C	V	N	A	A	D	L	Q
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		L	V	W	S	G	F	Q	A	D	P	A	V	C	E	P	G	G	V	A	E	D	V	L	T	A	A	H	K	A	A	F	N	A	P	L	D	A	R	L	S	T	A	V	N	D	T	R	Y	Y	S	V	D	Y	G	I	P	A	L	C	Y	G	P	Y	G	Q	G	P	H	A	F	D	E	R	I	D	L	E	S	L	R
Template Known Secondary structure																T	T																S	S								S	S			T																						T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	R	M	Y	Q	R	I	M	E	Q	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	T	L	S	I	A	L	F	V	A	E	W	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions