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Job DescriptionP0AED7
Confidence100.00%DateThu Jan 5 11:23:04 GMT 2012
Rank11Aligned Residues371
% Identity17%Templatec3pfeA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10......... 20.........30.........40..... ....50........ .60.....
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Query Sequence  SCPVIELTQQLIRRPSLS. . . . . . . . . . PDDAGCQALLIERLQAIGFTVERMDF. . . . ADTQNFWAWRGQG. . ETLAFAG
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Template Sequence  QEEILPSLCDYIKIPNKSPHFDAKWEEHGYXEQAVNHIANWCKSHAPKGXTLEIVRLKNRTPLLFXEIPGQIDDTVLLYG
Template Known Secondary structure  TT


B
GGG
TT
T

TT


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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   66...70.........80.........90.........100.........110.........120.........130.........140.....
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Query Sequence  HTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVV
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Template Sequence  HLDKQPEXSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY. PRCILIIEACEESGSYDLPFYI.
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S


TT
BTTB
TTSTT




TT


.S
GGGTSTT.
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   96...100.........110.........120.........130.........140.........150. ........160.........170...
 
   146...150.........160.........170.........180......... 190...... ...200.........210.........220..
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Query Sequence  EALMARNERLDYCLVGEPSSIEVVGDVVKNGRRGSLTCNLTIHG. . VQGHVAY. PHLADNPVHRAAPFLNELVAIEWDQG
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Template Sequence  ELLKERIGKPSLVICLDSGAGNYEQLWXTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI
Template Known Secondary structure 


S

B
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SSS

S
SS
B
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B
TTT

B
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   223. .....230.........240.........250
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Query Sequence  NE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FFPATSMQIANIQAGTGSNNVIPGEL
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Template Sequence  KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVXRPVT
Template Known Secondary structure 

GGG




GGGGTTTS


TT


S
S
TS
S


TTT

S
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S
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   254.....260.........270.........280.........290.........300.........310.........320.........330...
 
   251........260.........270......... 280.........290.... .....300.........310.........320....
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Query Sequence  FVQFNFRFSTELTDEMIKAQVLALLEKHQ. . . . . LRYTVDWWLSGQPFL. TARGKLVDAVVNAVEHYNEIKPQLLTTGGT
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Template Sequence  SLKLSXRLPPLVDPEAASVAXEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASXTYYDKPAAYXGEGGT
Template Known Secondary structure 
TT

SS
GGG

S

B






SS

SS
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   334.....340.........350.........360.........370.........380.........390.........400.........410...
 
   325....330... ......340.... .....350.........360.........370....
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Query Sequence  SDGRFIARM. . . GAQVVELGPVN. . ATIHKINECVNAADLQLLARMYQRIMEQLV
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Template Sequence  IPFXSXLGEQFPKAQFXITGVLGPHSNAHGPNEFLHLDXVKKLTSCVSYVLYSFS
Template Known Secondary structure 

TT


B
TT

TTSTT
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   414.....420.........430.........440.........450.........460........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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