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Job DescriptionP0AED7
Confidence100.00%DateThu Jan 5 11:23:04 GMT 2012
Rank23Aligned Residues322
% Identity21%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.. .......30.........40.........50.........60.........
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Query Sequence  SCPVIELTQQLIRRPSLSPDD. . . . . . . . . . . . AGCQALLIERLQAIGFTVERMDFADTQNFWAWRGQGETLAFAGHTDV
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Template Sequence  EDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDV. . DHIAGRIEAGKGNDVLGILCHVDV
Template Known Secondary structure  TS

B

TTS

SSSTT
TT

..TTT
SS


B
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   10.........20.........30.........40.........50.........60... ......70.........80.......
 
   70.........80.........90.........100.........110.........120.........130.........140.........
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Query Sequence  VPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALM
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Template Sequence  VPAG. . DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEE.
Template Known Secondary structure 



..TT
SS
TTS

SSSTTSTTTTT


SS

TT



TTSS
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   88.90. ........100.........110.........120.........130.........140.........150.........160....
 
   150.........160.........170..
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Query Sequence  ARNERLDYCLVGEPSSIEVVGDV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . MPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
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S
TT
SS
S


B










S
SSSB


SS
S
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   165....170.........180.........190.........200.........210.........220.........230.........240
 
   173......180.........190.........200.........210.... .....220.
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Query Sequence  . . . . . . . . VKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNEL. . . . . . . . . . . . . . . . . . . . . . . VAIEWDQ
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Template Sequence  YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKF
Template Known Secondary structure  TT

TT
B

BTTS
TTSB
TTS
B
TTT
TTSGGGT


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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  GNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARGKLV
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Template Sequence  HTDVMGDVTTNIGVIT. . . . . . YDNENAGLFGINLAYPEGFEFEKAMDRFANEIQQYGFEVKLGK. VQPPHYVDKNDPFV
Template Known Secondary structure  TTT
......TTT
TT

TGGGT.

B

GGG
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   321........330...... ...340.........350.........360.........370......... 380.........390...
 
   302.......310.........320.........330.........340.........350.........360.........370....
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Query Sequence  DAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLV
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Template Conservation    
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Template Sequence  QKLVTAYRN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTHQKNEYITKKQLFNATSIYLEAIYSLC
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SS
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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